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Report for CCDS92972.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
92972.1 Public Homo sapiens 2 USP40 24 110 108 CCDS HistoryNCBI Gene:55230Re-query CCDS DB by CCDS ID:92972.1Re-query CCDS DB by GeneID:55230See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 92972.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000678225.2 ENSP00000502952.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000678225.2Link to Ensembl Protein Viewer:ENSP00000502952.1Re-query CCDS DB by Nucleotide ID:ENST00000678225Re-query CCDS DB by Protein ID:ENSP00000502952
Original member Current member NCBI NM_001365479.2 NP_001352408.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001365479.2Link to Protein Sequence:NP_001352408.1Re-query CCDS DB by Nucleotide ID:NM_001365479Re-query CCDS DB by Protein ID:NP_001352408Link to BLAST:NP_001352408.1
Original member Current member NCBI NM_001382295.1 NP_001369224.1 Accepted alive Link to Nucleotide Sequence:NM_001382295.1Link to Protein Sequence:NP_001369224.1Re-query CCDS DB by Nucleotide ID:NM_001382295Re-query CCDS DB by Protein ID:NP_001369224Link to BLAST:NP_001369224.1

Chromosomal Locations for CCDS 92972.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 233477392 233477503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 233481203 233481297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 233485531 233485626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 233485767 233485977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 233488239 233488304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 233489365 233489483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 233491167 233491261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 233493425 233493551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 233496758 233496832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 233498548 233498612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 233499879 233499915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 233510049 233510135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 233511709 233511797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 233512569 233512622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 233519614 233519671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 233520991 233521114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 233523170 233523489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 233524492 233524562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 233525478 233525562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 233527407 233527578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 233529431 233529512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 233533479 233533779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 233540662 233540769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 233542268 233542363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 233549101 233549229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 233551376 233551519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 233554380 233554526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 233556855 233557019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 233559811 233559924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 233562736 233562803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 233565356 233565554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3711 nt):
ATGTTTGGGGACCTGTTTGAAGAGGAGTATTCCACTGTGTCTAATAATCAGTATGGAAAAGGGAAGAAAT
TAAAGACTAAAGCTTTGGAGCCACCTGCTCCTAGAGAATTCACCAATTTAAGCGGAATCAGAAATCAGGG
TGGAACCTGTTACCTCAATTCCCTTCTTCAGACTCTTCATTTCACACCTGAATTCAGAGAAGCTCTATTT
TCTCTTGGCCCAGAAGAGCTTGGTTTGTTTGAAGATAAGGATAAACCCGATGCAAAGGTTCGAATCATCC
CTTTACAGTTACAGCGCTTGTTTGCTCAGCTTCTGCTCTTAGACCAGGAAGCTGCATCCACAGCAGACCT
CACTGACAGCTTTGGGTGGACCAGTAATGAGGAAATGAGGCAACATGATGTGCAGGAACTGAATCGAATC
CTCTTCAGCGCTTTGGAAACTTCTTTAGTTGGGACCTCCGGTCATGACCTCATCTATCGTCTGTACCATG
GAACCATTGTTAACCAGATTGTTTGTAAAGAATGTAAGAACGTTAGCGAGAGGCAGGAAGACTTCTTAGA
TCTAACAGTAGCAGTCAAAAATGTATCCGGTTTGGAAGATGCTCTCTGGAACATGTATGTAGAAGAGGAA
GTTTTTGATTGTGACAACTTGTACCACTGTGGAACTTGTGACAGGCTGGTTAAAGCAGCAAAGTCGGCCA
AATTACGTAAGCTGCCTCCTTTTCTTACTGTTTCATTACTAAGATTTAATTTTGATTTTGTGAAATGCGA
ACGCTACAAGGAAACTAGCTGTTATACATTCCCTCTCCGGATTAATCTCAAGCCCTTTTGTGAACAGAGT
GAATTGGATGACTTAGAATATATATATGACCTCTTCTCAGTTATTATACACAAAGGTGGCTGCTACGGAG
GCCATTACCATGTATATATTAAAGATGTTGATCATTTGGGAAACTGGCAGTTTCAAGAGGAAAAAAGTAA
ACCAGATGTGAATCTGAAAGATCTCCAGAGTGAAGAAGAGATTGATCATCCACTGATGATTCTAAAAGCA
ATCTTATTAGAGGAGGAGAATAATCTAATTCCTGTTGATCAGCTGGGCCAGAAACTTTTGAAAAAGATAG
GAATATCTTGGAACAAGAAGTACAGAAAACAGCATGGACCACTGCGGAAGTTCTTACAGCTCCATTCTCA
GATATTTCTACTCAGTTCAGATGAAAGTACAGTTCGTCTCTTGAAGAATAGTTCTCTCCAGGCTGAGTCT
GATTTCCAAAGGAATGACCAGCAAATTTTCAAGATGCTTCCTCCAGAATCCCCAGGTTTAAACAATAGCA
TCTCCTGTCCCCACTGGTTTGATATAAATGATTCTAAAGTCCAGCCAATCAGGGAAAAGGATATTGAACA
GCAATTTCAGGGTAAAGAAAGTGCCTACATGTTGTTTTATCGGAAATCCCAGTTGCAGAGACCCCCTGAA
GCTCGAGCTAATCCAAGATATGGGGTTCCATGTCATTTACTGAATGAAATGGATGCAGCTAACATTGAAC
TGCAAACCAAAAGGGCAGAATGTGATTCTGCAAACAATACTTTTGAATTGCATCTTCACCTGGGCCCTCA
GTATCATTTCTTCAATGGGGCTCTGCACCCAGTAGTCTCTCAAACAGAAAGCGTGTGGGATTTGACCTTT
GATAAAAGAAAAACTTTAGGAGATCTCCGGCAGTCAATATTTCAGCTGTTAGAATTTTGGGAAGGAGACA
TGGTTCTTAGTGTTGCAAAGCTTGTACCAGCAGGACTTCACATTTACCAGTCACTTGGCGGGGATGAACT
GACACTGTGTGAAACTGAAATTGCTGATGGGGAAGACATCTTTGTGTGGAATGGGGTGGAGGTTGGTGGA
GTCCACATTCAAACTGGTATTGACTGCGAACCTCTACTTTTAAATGTTCTTCATCTAGACACAAGCAGTG
ATGGAGAAAAGTGTTGTCAGGTGATAGAATCTCCACATGTCTTTCCAGCTAATGCAGAAGTGGGCACTGT
CCTCACAGCCTTAGCAATCCCAGCAGGTGTCATCTTCATCAACAGTGCTGGATGTCCAGGTGGGGAGGGT
TGGACGGCCATCCCCAAGGAAGACATGAGGAAGACGTTCAGGGAGCAAGGGCTCAGAAATGGAAGCTCAA
TTTTAATTCAGGATTCTCATGATGATAACAGCTTGTTGACCAAGGAAGAGAAATGGGTCACTAGTATGAA
TGAGATTGACTGGCTCCACGTTAAAAATTTATGCCAGTTAGAATCTGAAGAGAAGCAAGTTAAAATATCA
GCAACTGTTAACACAATGGTGTTTGATATTCGAATTAAAGCCATAAAGGAATTAAAATTAATGAAGGAAC
TAGCTGACAACAGCTGTTTGAGACCTATTGATAGAAATGGGAAGCTTCTTTGTCCAGTGCCGGACAGCTA
TACTTTGAAGGAAGCAGAATTGAAGATGGGAAGTTCATTGGGACTGTGTCTTGGAAAAGCACCAAGTTCG
TCTCAGTTGTTCCTGTTTTTTGCAATGGGGAGTGACGTTCAACCTGGGACAGAAATGGAAATCGTAGTAG
AAGAAACAATATCTGTGAGAGATTGTTTAAAGTTAATGCTGAAGAAATCTGGCCTACAAGGAGATGCCTG
GCATTTACGAAAAATGGATTGGTGCTATGAAGCTGGAGAGCCTTTATGTGAAGAAGATGCAACACTGAAA
GAACTTCTGATATGTTCTGGAGATACTTTGCTTTTAATTGAAGGACAACTTCCTCCTCTGGGTTTCCTGA
AGGTGCCCATCTGGTGGTACCAGCTTCAGGGTCCCTCAGGACACTGGGAGAGTCATCAGGACCAGACCAA
CTGTACTTCGTCTTGGGGCAGAGTTTGGAGAGCCACTTCCAGCCAAGGTGCTTCTGGGAACGAGCCTGCG
CAAGTTTCTCTCCTCTACTTGGGAGACATAGAGATCTCAGAAGATGCCACGCTGGCGGAGCTGAAGTCTC
AGGCCATGACCTTGCCTCCTTTCCTGGAGTTCGGTGTCCCGTCCCCAGCCCACCTCAGAGCCTGGACGGT
GGAGAGGAAGCGCCCAGGCAGGCTTTTACGAACTGACCGGCAGCCACTCAGGGAATATAAACTAGGACGG
AGAATTGAGATCTGCTTAGAGCCCCTTCAGAAAGGCGAAAACTTGGGCCCCCAGGACGTGCTGCTGAGGA
CACAGGTGCGCATCCCTGGTGAGAGGACCTATGCCCCTGCCCTGGACCTGGTGTGGAACGCGGCCCAGGG
TGGGACTGCCGGCTCCCTGAGGCAGAGAGTTGCCGATTTCTATCGTCTTCCCGTGGAGAAGATTGAAATT
GCCAAATACTTTCCCGAAAAGTTCGAGTGGCTTCCGATATCTAGCTGGAACCAACAAATAACCAAGAGGA
AAAAGAAAAAAAAACAAGATTATTTGCAAGGGGCACCGTATTACTTGAAAGACGGAGATACTATTGGTGT
TAAGAATCTCCTGATTGACGACGATGATGATTTCAGTACAATCAGAGATGACACTGGAAAAGAAAAGCAG
AAACAACGGGCCCTGGGGAGAAGGAAAAGCCAAGAAGCCCTCCATGAGCAGAGCAGCTACATCCTCTCCA
GTGCAGAGACGCCTGCCCGGCCCCGAGCCCCGGAAACTTCTCTCTCCATCCACGTGGGGAGCTTCAGATA
A

Translation (1236 aa):
MFGDLFEEEYSTVSNNQYGKGKKLKTKALEPPAPREFTNLSGIRNQGGTCYLNSLLQTLHFTPEFREALF
SLGPEELGLFEDKDKPDAKVRIIPLQLQRLFAQLLLLDQEAASTADLTDSFGWTSNEEMRQHDVQELNRI
LFSALETSLVGTSGHDLIYRLYHGTIVNQIVCKECKNVSERQEDFLDLTVAVKNVSGLEDALWNMYVEEE
VFDCDNLYHCGTCDRLVKAAKSAKLRKLPPFLTVSLLRFNFDFVKCERYKETSCYTFPLRINLKPFCEQS
ELDDLEYIYDLFSVIIHKGGCYGGHYHVYIKDVDHLGNWQFQEEKSKPDVNLKDLQSEEEIDHPLMILKA
ILLEEENNLIPVDQLGQKLLKKIGISWNKKYRKQHGPLRKFLQLHSQIFLLSSDESTVRLLKNSSLQAES
DFQRNDQQIFKMLPPESPGLNNSISCPHWFDINDSKVQPIREKDIEQQFQGKESAYMLFYRKSQLQRPPE
ARANPRYGVPCHLLNEMDAANIELQTKRAECDSANNTFELHLHLGPQYHFFNGALHPVVSQTESVWDLTF
DKRKTLGDLRQSIFQLLEFWEGDMVLSVAKLVPAGLHIYQSLGGDELTLCETEIADGEDIFVWNGVEVGG
VHIQTGIDCEPLLLNVLHLDTSSDGEKCCQVIESPHVFPANAEVGTVLTALAIPAGVIFINSAGCPGGEG
WTAIPKEDMRKTFREQGLRNGSSILIQDSHDDNSLLTKEEKWVTSMNEIDWLHVKNLCQLESEEKQVKIS
ATVNTMVFDIRIKAIKELKLMKELADNSCLRPIDRNGKLLCPVPDSYTLKEAELKMGSSLGLCLGKAPSS
SQLFLFFAMGSDVQPGTEMEIVVEETISVRDCLKLMLKKSGLQGDAWHLRKMDWCYEAGEPLCEEDATLK
ELLICSGDTLLLIEGQLPPLGFLKVPIWWYQLQGPSGHWESHQDQTNCTSSWGRVWRATSSQGASGNEPA
QVSLLYLGDIEISEDATLAELKSQAMTLPPFLEFGVPSPAHLRAWTVERKRPGRLLRTDRQPLREYKLGR
RIEICLEPLQKGENLGPQDVLLRTQVRIPGERTYAPALDLVWNAAQGGTAGSLRQRVADFYRLPVEKIEI
AKYFPEKFEWLPISSWNQQITKRKKKKKQDYLQGAPYYLKDGDTIGVKNLLIDDDDDFSTIRDDTGKEKQ
KQRALGRRKSQEALHEQSSYILSSAETPARPRAPETSLSIHVGSFR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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