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Report for CCDS47424.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47424.1 Public Homo sapiens 6 TOMM6 24 110 108 CCDS HistoryNCBI Gene:100188893Re-query CCDS DB by CCDS ID:47424.1Re-query CCDS DB by GeneID:100188893See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47424.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000398881.4 ENSP00000381856.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000398881.4Link to Ensembl Protein Viewer:ENSP00000381856.3Re-query CCDS DB by Nucleotide ID:ENST00000398881Re-query CCDS DB by Protein ID:ENSP00000381856
Original member Current member EBI ENST00000398884.7 ENSP00000381859.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000398884.7Link to Ensembl Protein Viewer:ENSP00000381859.3Re-query CCDS DB by Nucleotide ID:ENST00000398884Re-query CCDS DB by Protein ID:ENSP00000381859
Original member Current member NCBI NM_001134493.2 NP_001127965.1 Accepted alive Link to Nucleotide Sequence:NM_001134493.2Link to Protein Sequence:NP_001127965.1Re-query CCDS DB by Nucleotide ID:NM_001134493Re-query CCDS DB by Protein ID:NP_001127965Link to BLAST:NP_001127965.1
Original member Current member NCBI NM_001382294.1 NP_001369223.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001382294.1Link to Protein Sequence:NP_001369223.1Re-query CCDS DB by Nucleotide ID:NM_001382294Re-query CCDS DB by Protein ID:NP_001369223Link to BLAST:NP_001369223.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001127965.1 74 Q96B49 74 100% 0 0
NP_001369223.1 74 Q96B49 74 100% 0 0

Chromosomal Locations for CCDS 47424.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 41787698 41787825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41789232 41789328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (225 nt):
ATGGCTTCCAGCACTGTCCCGGTGAGCGCTGCTGGCTCGGCTAATGAAACTCCCGAAATACCGGACAACG
TGGGAGATTGGCTTCGGGGCGTCTACCGCTTTGCCACTGATAGGAATGACTTCCGGAGGAACTTGATACT
AAATTTGGGACTCTTTGCTGCGGGAGTTTGGCTGGCCAGGAACTTGAGTGACATTGACCTCATGGCACCT
CAGCCAGGGGTGTAG

Translation (74 aa):
MASSTVPVSAAGSANETPEIPDNVGDWLRGVYRFATDRNDFRRNLILNLGLFAAGVWLARNLSDIDLMAP
QPGV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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