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Report for CCDS26505.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26505.1 Public Mus musculus 13 Ogn 23 108 98 CCDS HistoryNCBI Gene:18295Re-query CCDS DB by CCDS ID:26505.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26505.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021822.6 ENSMUSP00000021822.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021822.6Link to Ensembl Protein Viewer:ENSMUSP00000021822.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000021822Re-query CCDS DB by Protein ID:ENSMUSP00000021822
Original member Current member NCBI NM_008760.5 NP_032786.1 Accepted alive Link to Nucleotide Sequence:NM_008760.5Link to Protein Sequence:NP_032786.1Re-query CCDS DB by Nucleotide ID:NM_008760Re-query CCDS DB by Protein ID:NP_032786Link to BLAST:NP_032786.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032786.1 298 Q62000 298 100% 0 0

Chromosomal Locations for CCDS 26505.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 49609184 49609357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49611300 49611393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49615555 49615713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49618093 49618295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49621013 49621108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49622813 49622983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (897 nt):
ATGGAGACTGTGCACTCTACATTTCTCCTGCTACTCTTCGTGCCTCTGACACAGCAAGCACCACAGTCGC
AGCTGGACTCACATGTTAACTATGAGTATGCAACAGGCAATTCTGAAGAAACCAAATTTAGCCAGGATTA
TGAAGATAAATACCTGGATGGGAAAAGTATTAAGGAAAAAGAAACTATGATAATTCCTGATGAGAAAAGT
CTTCAGTTACAAAAAGATGAAGTTATACCATCATTACCAACCAAGAAAGAAAATGATGAAATGCCCACAT
GCCTGTTGTGTGTCTGCTTAAGTGGCTCTGTCTACTGTGAAGAAGTTGACATTGATGCTGTACCACCATT
GCCAAAGGAATCAGCTTATCTTTATGCACGATTCAACAAAATTAAAAAGCTGACTGCCAAGGATTTTGCA
GACATGCCAAACCTAAGAAGACTTGATTTTACGGGAAATTTGATAGAAGACATAGAAGATGGGACTTTTT
CAAAACTTTCTCTGTTAGAAGAACTTACACTTGCTGAAAACCAACTACTAAGACTTCCAGTTCTTCCTCC
AAAGCTTACTTTACTTAATGCCAAACACAACAAAATCAAGAGTAAAGGAATTAAAGCAAACACATTCAAA
AAACTGAATAAACTCTCTTTTCTCTATTTGGACCATAACGACCTGGAATCTGTGCCTCCTAATTTACCAG
AAAGTCTACGTGTAATTCACCTTCAGTTTAACAGCATATCTTCACTTACAGATGATACATTCTGCAAGGC
TAATGACACTCGTTACATTCGGGAGCGAATTGAAGAGATTCGCCTGGAGGGCAATCCAATTGCTCTGGGA
AAGCATCCAAACAGTTTTATCTGCTTAAAAAGATTACCCATAGGGTCATACTTCTAA

Translation (298 aa):
METVHSTFLLLLFVPLTQQAPQSQLDSHVNYEYATGNSEETKFSQDYEDKYLDGKSIKEKETMIIPDEKS
LQLQKDEVIPSLPTKKENDEMPTCLLCVCLSGSVYCEEVDIDAVPPLPKESAYLYARFNKIKKLTAKDFA
DMPNLRRLDFTGNLIEDIEDGTFSKLSLLEELTLAENQLLRLPVLPPKLTLLNAKHNKIKSKGIKANTFK
KLNKLSFLYLDHNDLESVPPNLPESLRVIHLQFNSISSLTDDTFCKANDTRYIRERIEEIRLEGNPIALG
KHPNSFICLKRLPIGSYF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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