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Report for CCDS37717.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37717.1 Public Mus musculus 17 Fbxo11 23 108 98 CCDS HistoryNCBI Gene:225055Re-query CCDS DB by CCDS ID:37717.1Re-query CCDS DB by GeneID:225055See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37717.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000005504.14 ENSMUSP00000005504.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000005504.14Link to Ensembl Protein Viewer:ENSMUSP00000005504.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000005504Re-query CCDS DB by Protein ID:ENSMUSP00000005504
Original member NCBI NM_001081034.2 NP_001074503.1 Updated not alive Link to Nucleotide Sequence:NM_001081034.2Link to Protein Sequence:NP_001074503.1Re-query CCDS DB by Nucleotide ID:NM_001081034Re-query CCDS DB by Protein ID:NP_001074503
Current member NCBI NM_001081034.3 NP_001074503.1 Accepted alive Link to Nucleotide Sequence:NM_001081034.3Link to Protein Sequence:NP_001074503.1Re-query CCDS DB by Nucleotide ID:NM_001081034Re-query CCDS DB by Protein ID:NP_001074503Link to BLAST:NP_001074503.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074503.1 930 Q7TPD1-1 930 100% 0 0

Chromosomal Locations for CCDS 37717.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 87992046 87992175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 87992258 87992356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 87992819 87992927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 87993147 87993254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 87993737 87993847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 87996036 87996179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 87996267 87996343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 87997331 87997416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 87997513 87997635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 87999533 87999627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 88000772 88000857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 88002752 88002969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 88008594 88008731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 88008816 88008922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 88009010 88009121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 88009204 88009310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 88010936 88011068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 88011293 88011376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 88012557 88012686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 88014406 88014550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 88015399 88015480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 88015588 88015712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 88065009 88065252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2793 nt):
ATGAACTCCGTCCGAGCCGCCAACCGGAGACCCAGGCGAGTGTCGCGGCCGCGCCCGGTGCAACAGCAGC
AGCAGCAGCCCCCGCAGCAGCCGCCGCCGCAGCCGCCTCAGCAACAGCCGCCGCCGCAGCCGCCCCAGCA
GCCGCCGCAGCAGCAGCCCCCGCCGCCGCCGCAGCAGCAGCCCCCGCCGCCGCCCCCGCCGCCTCCGCCG
CCGCCTCAGGATCGGAACAACGCCGGCGAGAGGGATGATGTTCCTGCAGATATGGTTGCAGAAGAATCAG
GTCCTGGTGCACAAAATAGTCCATACCAACTTCGCAGAAAAACTCTTTTGCCAAAAAGAACAGCGTGTCC
TACAAAGAGCAGTATGGAGGGTGCCTCTACTTCGACTACAGAAAACTTTGGTCATCGAGCAAAGCGTGCA
AGAGTGTCTGGAAAGTCACAAGATCTTTCAGCAGCACCCGCTGAACAGTATCTTCAGGAGAAGCTGCCAG
ATGAAGTAGTTTTAAAAATATTTTCTTATTTGCTGGAACAAGACCTTTGTAGAGCTGCTTGCGTGTGTAA
ACGCTTCAGTGAGCTTGCTAATGATCCAATTTTGTGGAAACGATTATATATGGAAGTATTTGAATATACC
CGGCCGATGATGCATCCTGAACCTGGTAAATTCTACCAGATTAATCCAGAAGAATATGAACATCCAAATC
CATGGAAAGAAAGTTTTCAACAGTTGTATAAAGGTGCGCATGTAAAGCCAGGATTTGCGGAACATTTCTA
TAGTAATCCTGCAAGATACAAAGGAAGAGAAAACATGTTGTATTATGATACTATTGAAGATGCCCTTGGA
GGAGTACAAGAAGCACATTTTGATGGGCTTATCTTTGTTCATTCTGGAATATATACTGATGAATGGATAT
ATATTGAATCTCCAATTACTATGATTGGTGCAGCACCTGGCAAGGTTGCAGACAAGGTCATCATTGAGAA
CACTAGAGATTCGACCTTCGTGTTCATGGAAGGCTCTGAAGATGCTTATGTTGGATACATGACGATAAGA
TTCAACCCTGATGACAAATCTGCTCAGCATCACAACGCACACCACTGCTTAGAGATCACAGTCAACTGCA
GCCCTATTATTGACCACTGTATAATCCGCAGCACATGCACAGTTGGTTCTGCAGTGTGTGTCAGTGGCCA
GGGGGCGTGTCCCACTATCAAGCATTGTAACATCAGTGACTGTGAAAACGTCGGACTTTATATAACAGAT
CATGCACAGGGAATATATGAAGATAATGAAATTTCTAATAATGCGTTAGCTGGGATTTGGGTTAAAAATC
ATGGAAATCCAATTATTAGACGGAATCACATTCATCATGGACGTGATGTTGGTGTGTTCACATTTGATCA
TGGCATGGGCTACTTTGAAAGTTGCAACATACACAGAAACAGGATAGCAGGCTTTGAGGTAAAAGCCTAT
GCCAATCCCACAGTGGTTCGATGTGAGATTCACCACGGGCAGACTGGAGGAATATACGTCCACGAGAAAG
GAAGAGGACAGTTCATAGAGAACAAGATCTATGCAAACAATTTCGCAGGCGTGTGGATTACCTCAAATAG
TGACCCAACAATAAGGGGGAATTCTATATTTAATGGAAATCAAGGAGGAGTTTACATCTTTGGTGACGGA
CGAGGCCTTATAGAAGGAAATGACATTTATGGTAATGCGTTAGCAGGAATTCAGATCAGGACAAACAGTT
GTCCTATTGTTCGACATAACAAAATTCATGATGGACAGCATGGTGGGATTTATGTGCATGAAAAGGGGCA
AGGAGTAATAGAAGAGAATGAAGTTTACAGCAACACTCTGGCTGGCGTCTGGGTGACAACTGGCAGCACA
CCAGTTCTAAGAAGAAACCGGATACACAGTGGCAAGCAGGTTGGTGTTTATTTCTATGACAATGGACATG
GTGTTCTAGAAGATAACGACATCTACAATCACATGTATTCAGGGGTTCAGATAAGAACTGGAAGCAACCC
CAAAATTAGACGCAACAAAATTTGGGGAGGACAGAATGGTGGAATTCTAGTTTATAATTCTGGTCTAGGC
TGTATAGAAGACAATGAAATATTTGACAACGCGATGGCTGGAGTCTGGATTAAAACAGATAGTAATCCTA
CGCTAAGAAGAAATAAAATCCATGATGGAAGAGATGGTGGCATCTGTATATTTAATGGGGGTCGAGGTCT
CCTTGAAGAAAATGATATTTTCAGGAACGCTCAAGCAGGTGTCCTCATCAGCACTAACAGTCATCCAGTA
TTAAGGAAAAACAGAATATTTGATGGATTTGCTGCAGGTATTGAAATTACAAATCATGCAACTGCAACAC
TCGAAGGCAATCAGATCTTTAACAACCGATTTGGAGGCTTATTTTTAGCATCTGGTGTTAATGTGACAAT
GAAAGATAACAAAATAATGAACAATCAAGATGCCATAGAAAAGGCTGTTAGTAGAGGACAATGTCTATAT
AAAATATCAAGTTATACCAGCTACCCCATGCATGACTTCTACAGATGTCATACTTGTAACACCACAGATC
GAAATGCCATATGTGTGAACTGCATTAAGAAGTGCCATCAGGGACATGATGTAGAGTTCATTAGACATGA
TAGGTTTTTCTGTGACTGTGGTGCTGGAACGCTGTCTAATCCTTGTACCTTAGCTGGCGAGCCTACACAC
GACACAGACACACTCTATGACTCTGCCCCACCTATAGAATCTAATACGTTGCAGCACAACTGA

Translation (930 aa):
MNSVRAANRRPRRVSRPRPVQQQQQQPPQQPPPQPPQQQPPPQPPQQPPQQQPPPPPQQQPPPPPPPPPP
PPQDRNNAGERDDVPADMVAEESGPGAQNSPYQLRRKTLLPKRTACPTKSSMEGASTSTTENFGHRAKRA
RVSGKSQDLSAAPAEQYLQEKLPDEVVLKIFSYLLEQDLCRAACVCKRFSELANDPILWKRLYMEVFEYT
RPMMHPEPGKFYQINPEEYEHPNPWKESFQQLYKGAHVKPGFAEHFYSNPARYKGRENMLYYDTIEDALG
GVQEAHFDGLIFVHSGIYTDEWIYIESPITMIGAAPGKVADKVIIENTRDSTFVFMEGSEDAYVGYMTIR
FNPDDKSAQHHNAHHCLEITVNCSPIIDHCIIRSTCTVGSAVCVSGQGACPTIKHCNISDCENVGLYITD
HAQGIYEDNEISNNALAGIWVKNHGNPIIRRNHIHHGRDVGVFTFDHGMGYFESCNIHRNRIAGFEVKAY
ANPTVVRCEIHHGQTGGIYVHEKGRGQFIENKIYANNFAGVWITSNSDPTIRGNSIFNGNQGGVYIFGDG
RGLIEGNDIYGNALAGIQIRTNSCPIVRHNKIHDGQHGGIYVHEKGQGVIEENEVYSNTLAGVWVTTGST
PVLRRNRIHSGKQVGVYFYDNGHGVLEDNDIYNHMYSGVQIRTGSNPKIRRNKIWGGQNGGILVYNSGLG
CIEDNEIFDNAMAGVWIKTDSNPTLRRNKIHDGRDGGICIFNGGRGLLEENDIFRNAQAGVLISTNSHPV
LRKNRIFDGFAAGIEITNHATATLEGNQIFNNRFGGLFLASGVNVTMKDNKIMNNQDAIEKAVSRGQCLY
KISSYTSYPMHDFYRCHTCNTTDRNAICVNCIKKCHQGHDVEFIRHDRFFCDCGAGTLSNPCTLAGEPTH
DTDTLYDSAPPIESNTLQHN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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