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Report for CCDS25829.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25829.1 Public Mus musculus 12 Odc1 23 108 98 CCDS HistoryNCBI Gene:18263Re-query CCDS DB by CCDS ID:25829.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25829.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000171737.2 ENSMUSP00000128661.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171737.2Link to Ensembl Protein Viewer:ENSMUSP00000128661.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171737Re-query CCDS DB by Protein ID:ENSMUSP00000128661
Original member NCBI NM_013614.2 NP_038642.2 Updated not alive Link to Nucleotide Sequence:NM_013614.2Link to Protein Sequence:NP_038642.2Re-query CCDS DB by Nucleotide ID:NM_013614Re-query CCDS DB by Protein ID:NP_038642
Current member NCBI NM_013614.3 NP_038642.2 Accepted alive Link to Nucleotide Sequence:NM_013614.3Link to Protein Sequence:NP_038642.2Re-query CCDS DB by Nucleotide ID:NM_013614Re-query CCDS DB by Protein ID:NP_038642Link to BLAST:NP_038642.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038642.2 461 P00860 461 100% 0 0

Chromosomal Locations for CCDS 25829.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 17547299 17547400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17547633 17547806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17547950 17548122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17548309 17548443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17548545 17548626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17548787 17548870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17549424 17549586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17549668 17549780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17549863 17550077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17550607 17550751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1386 nt):
ATGAGCAGCTTTACTAAGGACGAGTTTGACTGCCACATCCTTGATGAAGGCTTTACTGCTAAGGACATTC
TGGACCAAAAAATCAATGAAGTCTCTTCCTCTGACGATAAGGATGCGTTCTATGTTGCGGACCTCGGAGA
CATTCTAAAGAAGCATCTGAGGTGGCTAAAAGCTCTTCCCCGCGTCACTCCCTTTTACGCAGTCAAGTGT
AACGATAGCAGAGCCATAGTGAGCACCCTAGCTGCCATTGGGACAGGATTTGACTGTGCAAGCAAGACTG
AAATACAGTTGGTGCAGGGGCTTGGGGTGCCTGCAGAGAGGGTTATCTATGCAAATCCTTGTAAACAAGT
CTCTCAAATCAAGTATGCTGCCAGTAACGGAGTCCAGATGATGACTTTTGACAGTGAAATTGAATTGATG
AAAGTCGCCAGAGCACATCCAAAGGCAAAGTTGGTTCTACGGATTGCCACTGATGATTCCAAAGCTGTCT
GTCGCCTCAGTGTTAAGTTTGGTGCCACACTCAAAACCAGCAGGCTTCTCTTGGAACGGGCAAAAGAGCT
AAATATTGACGTCATTGGTGTGAGCTTCCATGTGGGCAGTGGATGTACTGATCCTGAGACCTTCGTTCAG
GCAGTGTCGGATGCCCGCTGTGTGTTTGACATGGCAACAGAAGTTGGTTTCAGCATGCATCTGCTTGATA
TTGGTGGTGGCTTTCCTGGATCTGAAGATACAAAGCTTAAATTTGAAGAGATCACCAGTGTAATCAACCC
AGCTCTGGACAAGTACTTCCCATCAGACTCTGGAGTGAGAATCATAGCTGAGCCAGGCAGATACTATGTC
GCATCAGCTTTCACGCTTGCAGTCAACATCATTGCCAAAAAAACCGTGTGGAAGGAGCAGCCCGGCTCTG
ACGATGAAGATGAGTCAAATGAACAAACCTTCATGTATTATGTGAATGATGGAGTATATGGATCATTTAA
CTGCATTCTTTATGATCATGCCCATGTGAAGGCCCTGCTGCAGAAGAGACCCAAGCCAGACGAGAAGTAT
TACTCATCCAGCATCTGGGGACCAACATGTGATGGCCTTGATCGGATCGTGGAGCGCTGTAACCTGCCTG
AAATGCATGTGGGTGATTGGATGCTGTTTGAGAACATGGGTGCATACACTGTTGCTGCTGCTTCTACTTT
CAATGGGTTCCAGAGGCCAAACATCTACTATGTAATGTCACGGCCAATGTGGCAACTCATGAAGCAGATC
CAGAGCCATGGCTTCCCGCCGGAGGTGGAGGAGCAGGATGATGGCACGCTGCCCATGTCTTGTGCCCAGG
AGAGCGGGATGGACCGTCACCCTGCAGCCTGTGCTTCTGCTAGGATCAATGTGTAG

Translation (461 aa):
MSSFTKDEFDCHILDEGFTAKDILDQKINEVSSSDDKDAFYVADLGDILKKHLRWLKALPRVTPFYAVKC
NDSRAIVSTLAAIGTGFDCASKTEIQLVQGLGVPAERVIYANPCKQVSQIKYAASNGVQMMTFDSEIELM
KVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLLLERAKELNIDVIGVSFHVGSGCTDPETFVQ
AVSDARCVFDMATEVGFSMHLLDIGGGFPGSEDTKLKFEEITSVINPALDKYFPSDSGVRIIAEPGRYYV
ASAFTLAVNIIAKKTVWKEQPGSDDEDESNEQTFMYYVNDGVYGSFNCILYDHAHVKALLQKRPKPDEKY
YSSSIWGPTCDGLDRIVERCNLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPNIYYVMSRPMWQLMKQI
QSHGFPPEVEEQDDGTLPMSCAQESGMDRHPAACASARINV


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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