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Report for CCDS30251.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30251.1 Public Mus musculus X Obp1a 23 108 98 CCDS HistoryNCBI Gene:18249Re-query CCDS DB by CCDS ID:30251.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 30251.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088201.1 ENSMUSP00000085531.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088201.1Link to Ensembl Protein Viewer:ENSMUSP00000085531.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000088201Re-query CCDS DB by Protein ID:ENSMUSP00000085531
Original member Current member NCBI NM_008754.2 NP_032780.2 Accepted alive Link to Nucleotide Sequence:NM_008754.2Link to Protein Sequence:NP_032780.2Re-query CCDS DB by Nucleotide ID:NM_008754Re-query CCDS DB by Protein ID:NP_032780Link to BLAST:NP_032780.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032780.2 163 Q9D3H2 163 100% 0 0

Chromosomal Locations for CCDS 30251.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 78086298 78086314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 78087525 78087623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 78088321 78088431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 78089740 78089813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 78090705 78090844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 78091272 78091322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (492 nt):
ATGGCAAAATTTCTGCTGCTTGCTTTGACATTTGGACTGGCACATGCTGCGATGGAAGGACCATGGAAAA
CTGTTGCTATTGCTGCTGATAGAGTAGACAAGATAGAGAGAGGTGGAGAACTGAGAATCTATTGTCGTAG
CCTTACCTGTGAAAAGGAATGCAAGGAAATGAAAGTCACATTTTATGTCAATGAAAATGGACAGTGCTCA
TTGACCACAATCACTGGGTATTTGCAAGAAGATGGCAAGACCTACAAAACTCAGTTTCAAGGGAATAATC
GTTATAAACTTGTGGATGAGTCACCTGAGAACTTAACATTTTATAGTGAGAACGTGGACAGAGCTGACCG
GAAAACAAAATTGCTATTTATTCTTGGCCATGGCCCTTTAACTTCTGAACAAAAGGAAAAATTTGCTGAA
CTTGCTGAAGAAAAGGGAATTCCAGCTGGAAACATCAGAGAAGTCCTGATTACAGATTACTGTCCTGAAT
GA

Translation (163 aa):
MAKFLLLALTFGLAHAAMEGPWKTVAIAADRVDKIERGGELRIYCRSLTCEKECKEMKVTFYVNENGQCS
LTTITGYLQEDGKTYKTQFQGNNRYKLVDESPENLTFYSENVDRADRKTKLLFILGHGPLTSEQKEKFAE
LAEEKGIPAGNIREVLITDYCPE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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