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Report for CCDS50947.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50947.1 Public Mus musculus 3 Ntrk1 23 108 98 CCDS HistoryNCBI Gene:18211Re-query CCDS DB by CCDS ID:50947.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50947.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029712.4 ENSMUSP00000029712.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029712.4Link to Ensembl Protein Viewer:ENSMUSP00000029712.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000029712Re-query CCDS DB by Protein ID:ENSMUSP00000029712
Original member Current member NCBI NM_001033124.1 NP_001028296.1 Accepted alive Link to Nucleotide Sequence:NM_001033124.1Link to Protein Sequence:NP_001028296.1Re-query CCDS DB by Nucleotide ID:NM_001033124Re-query CCDS DB by Protein ID:NP_001028296Link to BLAST:NP_001028296.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028296.1 799 Q3UFB7 799 100% 0 0

Chromosomal Locations for CCDS 50947.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 87778414 87778599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87779636 87779794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87780071 87780311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87781431 87781603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87781741 87781871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87782151 87782297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87782725 87782827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87783074 87783129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87783287 87783304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87783670 87783999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87785968 87786100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87788317 87788459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87788622 87788773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87789617 87789685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87791374 87791445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87791670 87791744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87794933 87795144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2400 nt):
ATGCTGCGAGGCCAGCGGCTCGGGCAGCTGGGCTGGCATCGCCCGGCCGCGGGGCTAGGCAGTCTGATGA
CTTCGTTGATGCTGGCCTGTGCCTCCGCCGCATCCTGTCGCGAGGTCTGCTGTCCCGTGGGCCCCTCGGG
GCTGCGCTGCACCAGGGCAGGGTCCCTGGATACCCTCCGCGGCCTGCGGGGCGCCGGGAACCTGACGGAG
CTCTACGTGGAAAACCAGCAGCACCTGCAACGCTTGGAGTTTGAGGACCTGCAGGGCCTGGGGGAGTTGA
GAAGCCTAACCATCGTGAAGAGTGGCCTCCGCTTTGTGGCCCCAGATGCCTTCCGTTTCACCCCTCGGCT
CAGTCACCTGAATCTGTCCTCCAATGCGTTGGAGTCCCTCTCCTGGAAAACTGTGCAGGGCCTCTCCCTA
CAGGACCTGACCCTGTCAGGGAACCCACTGCATTGTTCCTGTGCCCTGTTCTGGCTCCAGCGTTGGGAGC
AGGAAGGGCTGTGTGGTGTGCATACACAGACGCTTCATGACTCTGGGCCTGGAGACCAGTTCCTCCCACT
GGGACACAACACCAGTTGTGGTGTACCCACAGTGAAGATCCAGATGCCCAATGACTCTGTGGAAGTGGGC
GATGACGTGTTTCTGCAGTGCCAGGTGGAGGGGCTGGCCCTACAGCAGGCTGACTGGATCCTCACAGAGC
TGGAAGGGGCAGCCACCGTGAAGAAATTTGGAGATCTGCCATCCCTGGGGCTGATTCTGGTCAATGTCAC
CAGTGATCTCAACAAGAAGAATGTGACGTGCTGGGCAGAGAATGATGTGGGCCGGGCCGAGGTCTCTGTC
CAAGTCAGCGTCTCCTTCCCAGCCAGTGTGCACCTGGGCCTAGCGGTGGAGCAGCATCATTGGTGCATCC
CCTTCTCGGTGGACGGGCAGCCAGCACCGTCTCTGCGCTGGTTGTTCAACGGCTCTGTGCTCAACGAGAC
CAGTTTCATCTTCACTCAGTTCTTGGAGTCTGCGCTGACTAATGAGACCATGCGGCACGGCTGCCTGCGC
CTCAATCAGCCCACGCATGTCAACAACGGGAACTACACCCTGCTGGCGGCCAACCCCTACGGCCAGGCTG
CCGCCTCCGTCATGGCTGCTTTTATGGACAACCCTTTTGAGTTCAACCCTGAGGACCCCATCCCTGTCTC
CTTCTCGCCAGTGGACGGTAACAGCACATCAAGAGACCCAGTGGAGAAGAAAGATGAAACCCCTTTTGGG
GTCTCTGTGGCTGTGGGCCTAGCCGTCTCTGCCGCCCTCTTCCTTTCTGCCCTCCTTCTTGTGCTCAACA
AATGTGGACAGAGGAGCAAATTTGGGATCAACCGCCCTGCTGTATTAGCTCCAGAGGATGGGCTGGCCAT
GTCCCTACACTTCATGACACTGGGTGGCAGTTCTCTTTCCCCTACTGAGGGCAAAGGCTCCGGACTCCAG
GGCCACATCATGGAGAACCCACAGTACTTCAGTGATACCTGTGTCCATCACATCAAGCGCCAGGACATCA
TTCTCAAGTGGGAGCTAGGGGAGGGAGCCTTTGGAAAGGTCTTTCTCGCTGAGTGCTACAACCTTCTGAA
TGATCAGGACAAGATGCTCGTGGCTGTCAAGGCACTGAAGGAGGCATCCGAGAATGCTCGGCAGGACTTT
CAGCGTGAGGCCGAGCTGCTCACCATGCTACAGCACCAGCACATCGTGCGCTTCTTTGGAGTCTGCACCG
AGGGTGGCCCGTTGCTCATGGTCTTTGAGTACATGCGCCACGGGGACCTCAACCGTTTCCTCCGGTCCCA
CGGACCTGATGCAAAGCTGCTGGCTGGTGGTGAGGATGTGGCTCCTGGTCCTCTGGGCCTTGGGCAGCTT
CTGGCTGTGGCTAGCCAGGTGGCTGCTGGTATGGTATATCTAGCCAGCCTGCACTTTGTGCACCGGGATC
TGGCCACACGCAACTGTCTGGTGGGTCAGGGACTAGTGGTGAAGATTGGAGACTTTGGCATGAGCAGAGA
CATCTATAGCACAGACTATTACCGAGTGGGAGGTCGGACCATGCTGCCCATCCGCTGGATGCCACCCGAG
AGCATCCTCTACCGCAAGTTCAGCACCGAGAGCGATGTGTGGAGCTTTGGGGTGGTGCTCTGGGAGATCT
TCACCTATGGAAAGCAGCCCTGGTACCAGCTCTCCAACACTGAGGCGATCGAGTGTATCACGCAGGGCCG
GGAGCTGGAGCGGCCGCGCGCCTGCCCTCCTGATGTCTACGCCATCATGCGAGGCTGCTGGCAGCGAGAA
CCGCAGCAACGCCTCAGCATGAAGGATGTGCACGCGCGTCTGCAGGCCCTGGCACAGGCGCCACCCAGTT
ACCTGGACGTTCTGGGCTAG

Translation (799 aa):
MLRGQRLGQLGWHRPAAGLGSLMTSLMLACASAASCREVCCPVGPSGLRCTRAGSLDTLRGLRGAGNLTE
LYVENQQHLQRLEFEDLQGLGELRSLTIVKSGLRFVAPDAFRFTPRLSHLNLSSNALESLSWKTVQGLSL
QDLTLSGNPLHCSCALFWLQRWEQEGLCGVHTQTLHDSGPGDQFLPLGHNTSCGVPTVKIQMPNDSVEVG
DDVFLQCQVEGLALQQADWILTELEGAATVKKFGDLPSLGLILVNVTSDLNKKNVTCWAENDVGRAEVSV
QVSVSFPASVHLGLAVEQHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTQFLESALTNETMRHGCLR
LNQPTHVNNGNYTLLAANPYGQAAASVMAAFMDNPFEFNPEDPIPVSFSPVDGNSTSRDPVEKKDETPFG
VSVAVGLAVSAALFLSALLLVLNKCGQRSKFGINRPAVLAPEDGLAMSLHFMTLGGSSLSPTEGKGSGLQ
GHIMENPQYFSDTCVHHIKRQDIILKWELGEGAFGKVFLAECYNLLNDQDKMLVAVKALKEASENARQDF
QREAELLTMLQHQHIVRFFGVCTEGGPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQL
LAVASQVAAGMVYLASLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPE
SILYRKFSTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIECITQGRELERPRACPPDVYAIMRGCWQRE
PQQRLSMKDVHARLQALAQAPPSYLDVLG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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