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Report for CCDS90548.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90548.1 Public Mus musculus 9 Slc37a4 23 108 98 CCDS HistoryNCBI Gene:14385Re-query CCDS DB by CCDS ID:90548.1Re-query CCDS DB by GeneID:14385See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90548.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000213268.1 ENSMUSP00000150753.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213268.1Link to Ensembl Protein Viewer:ENSMUSP00000150753.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213268Re-query CCDS DB by Protein ID:ENSMUSP00000150753
Original member NCBI NM_001357729.1 NP_001344658.1 Updated not alive Link to Nucleotide Sequence:NM_001357729.1Link to Protein Sequence:NP_001344658.1Re-query CCDS DB by Nucleotide ID:NM_001357729Re-query CCDS DB by Protein ID:NP_001344658
Current member NCBI NM_001357729.2 NP_001344658.1 Accepted alive Link to Nucleotide Sequence:NM_001357729.2Link to Protein Sequence:NP_001344658.1Re-query CCDS DB by Nucleotide ID:NM_001357729Re-query CCDS DB by Protein ID:NP_001344658Link to BLAST:NP_001344658.1
Original member NCBI NM_001357730.1 NP_001344659.1 Updated not alive Link to Nucleotide Sequence:NM_001357730.1Link to Protein Sequence:NP_001344659.1Re-query CCDS DB by Nucleotide ID:NM_001357730Re-query CCDS DB by Protein ID:NP_001344659
Current member NCBI NM_001357730.2 NP_001344659.1 Accepted alive Link to Nucleotide Sequence:NM_001357730.2Link to Protein Sequence:NP_001344659.1Re-query CCDS DB by Nucleotide ID:NM_001357730Re-query CCDS DB by Protein ID:NP_001344659Link to BLAST:NP_001344659.1

Chromosomal Locations for CCDS 90548.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 44398474 44398621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44399249 44399481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44399795 44400038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44400489 44400647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44400847 44400932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44401421 44401534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44401707 44401769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44402073 44402211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44402302 44402468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1353 nt):
ATGGCAGCCCAAGGCTACGGCTACTATCGCACTGTCATATTTGCGGCCATGTTTGGAGGCTACAGCCTGT
ACTATTTCAACCGCAAAACCTTCTCCTTTGTCATGCCCTCCTTGGTGGATGAGATCGCTCTGGACAAGGA
CGATTTGGGGCTCATCACAAGCAGCCAGTCGGCAGCCTACGCCATCAGCAAGTTTGTGAGCGGGGTTCTG
TCAGATCAGATGAGCGCCCGCTGGCTCTTCTCCTCTGGGCTGCTCCTGGTTGGTCTGGTCAACGTAGTCT
TCTCATGGAGCTCCACAGTGTCAGCCTTTGCTGCTCTTTGGTTTCTTAATGGTCTGGCACAGGGGCTGGG
CTGGCCCCCCTGTGGGAAGATCCTGAGGAAGTGGTTTGAGCCATCCCAGTTTGGCACTTGGTGGGCTGTG
TTGTCAACCAGCATGAACCTGGCTGGAAGTTTGGGACCTATCTTGGCAACGATCCTCGCCCAGAGCTACA
GCTGGCGCAGCACACTGGCCCTGTCTGGGGCACTGTGTGTGGTTGTCTCCTTCTTCTGTCTGCTGCTTAT
CCACAATGAACCTGCTGATGTTGGACTCCGAAATCTGGACCCTGCCCCCTCCAAGGGCAAAAAGGGCTCA
TCAAAGGAGGAGAGCACCCTACAGGATCTGCTGCTGTCCCCCTATCTCTGGGTGCTGTCCACTGGCTACC
TCGTGGTCTTCGGAGTAAAGACTTGCTGTACAGACTGGGGCCAGTTCTTCCTTATCCAGGAGCGAGGGCA
GTCCGCCCTTGTGGGTAGCTCCTACATCAGTGCCCTCGAGGTCGGAGGCCTTGTAGGAAGCATTGCAGCT
GGTTACCTGTCAGACAGGGCCATGGCGAAGGCAGGGCTGTCTCTGTATGGGAACCCTCGTCACGGCCTAT
TGCTACTCATGATGGCTGGGATGGCAGCATCCATGTTCCTCTTCCGAGTAACGGTGACCAGTGACTCACC
CAAGGATGCTTTCTGGACTCCTGCTCTCCATCCTCTGGCTGAGCTCACAGGCTTTACGGAGCATGAGATC
TGGATCCTGGTTTTAGGAGCCGTGTTTGGTTTCTCTTCTTATGGTCCCATTGCCTTGTTTGGAGTCATAG
CCAATGAGAGTGCACCTCCCAACTTGTGTGGAACCTCTCATGCTATTGTGGGACTTATGGCCAATGTGGG
TGGATTTCTGGCTGGCTTACCCTTCAGCACCATTGCCAAGCACTATAGCTGGAGCACAGCCTTCTGGGTG
GCAGAAGTGGTTTGTGGAGCCAGCACAGTTGTCTTCTTCTTGCTTCGAAATATCCGCACCAAGATGGGCC
GAGTATCCAAGAAGGGAGAGTGA

Translation (450 aa):
MAAQGYGYYRTVIFAAMFGGYSLYYFNRKTFSFVMPSLVDEIALDKDDLGLITSSQSAAYAISKFVSGVL
SDQMSARWLFSSGLLLVGLVNVVFSWSSTVSAFAALWFLNGLAQGLGWPPCGKILRKWFEPSQFGTWWAV
LSTSMNLAGSLGPILATILAQSYSWRSTLALSGALCVVVSFFCLLLIHNEPADVGLRNLDPAPSKGKKGS
SKEESTLQDLLLSPYLWVLSTGYLVVFGVKTCCTDWGQFFLIQERGQSALVGSSYISALEVGGLVGSIAA
GYLSDRAMAKAGLSLYGNPRHGLLLLMMAGMAASMFLFRVTVTSDSPKDAFWTPALHPLAELTGFTEHEI
WILVLGAVFGFSSYGPIALFGVIANESAPPNLCGTSHAIVGLMANVGGFLAGLPFSTIAKHYSWSTAFWV
AEVVCGASTVVFFLLRNIRTKMGRVSKKGE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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