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Report for CCDS20850.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20850.1 Public Mus musculus 7 Npas1 23 108 98 CCDS HistoryNCBI Gene:18142Re-query CCDS DB by CCDS ID:20850.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20850.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002053.8 ENSMUSP00000002053.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002053.8Link to Ensembl Protein Viewer:ENSMUSP00000002053.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000002053Re-query CCDS DB by Protein ID:ENSMUSP00000002053
Original member Current member EBI ENSMUST00000210748.1 ENSMUSP00000147412.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000210748.1Link to Ensembl Protein Viewer:ENSMUSP00000147412.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000210748Re-query CCDS DB by Protein ID:ENSMUSP00000147412
Original member Current member NCBI NM_008718.2 NP_032744.1 Accepted alive Link to Nucleotide Sequence:NM_008718.2Link to Protein Sequence:NP_032744.1Re-query CCDS DB by Nucleotide ID:NM_008718Re-query CCDS DB by Protein ID:NP_032744Link to BLAST:NP_032744.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032744.1 594 P97459 594 100% 0 0

Chromosomal Locations for CCDS 20850.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 16455835 16456304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16459186 16459280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16460806 16460953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16461330 16461436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16461781 16461938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16462150 16462265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16463248 16463416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16465107 16465196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16465361 16465434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16474593 16474828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16475507 16475628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1785 nt):
ATGGCGACCCCCTATCCCAGAAGCGGTGGCCGAGGTGAAGTCAAGTGCGGGGGCGGCCGTGGAGCCGGCG
TCCCCTGGGATTTCCTGCCTGGGCTGATGGTCAAGGCCCCGCCCGGACCCTGCCTGCAGGCGCAGCGCAA
AGAGAAGTCCCGCAACGCTGCGCGCTGGCGACGCGGGAAGGAAAATCTGGAGTTCTTCGAGCTAGCCAAG
CTGCTCCCTCTGCCCGGTGCCATCTCCAGCCAGCTGGACAAGGCGTCCATCGTGCGTCTTAGCGTCACCT
ACCTCCGCCTGCGTCGTTTTGCCGCGCTGGGGGCGCCGCCCTGGGGGTTGCGGGCCGTCGGGCCTCCGGC
TGGCCTCGCCCCAGGCCGCCGAGGCCCTGTGGCTCTGGTCTCTGAAGTCTTCGAGCAACACCTAGGTGGA
CACATCCTACAGTCCTTGGATGGCTTCGTGTTCGCTTTGAACCAGGAAGGGAAATTTCTCTACATCTCAG
AGACAGTGTCCATCTACCTGGGTCTCTCACAGGTGGAGCTGACGGGCAGCAGCGTCTTCGACTACATCCA
TCCTGGGGACCACTCGGAGGTCCTAGAGCAACTTGGATTGCGGGCTGCAAGCATCGGTCCCCCTACACCA
CCTTCCGTGTCCTCCTCTTCCTCATCGTCTTCCTCCTCGCTGGTGGACACCCCTGAGATTGAAGCCAGCC
CCACCGAGGCATCGCCTGCCTTCCGAGCCCAAGAGCGGTCCTTCTTTGTCCGCATGAAGTCCACCCTCAC
CAAGAGGGGCCTGAATGTCAAAGCCTCGGGGTACAAGGTCATTCATGTGACAGGGCGCCTGAGGGCCCGA
GCCCTGGGTCTTGTAGCCCTTGGACACACGCTGCCCCCAGCCCCACTGGCTGAGCTGCCTTTGCACGGAC
ACATGATTGTCTTCCGCCTCAGCCTGGGCCTCACCATCCTTGCTTGTGAGAGCAGAGTTAGCGACCATAT
GGACATGGGGCCCTCAGAGCTTGTGGGACGCAGCTGCTACCAGTTTGTTCATGGACAGGATGCAACCAGG
ATCCGCCAAAGCCATCTGGACCTGCTGGACAAAGGGCAGGTGGTGACTGGTTACTACCGTTGGCTGCAGC
GTGCGGGGGGCTTCGTGTGGCTGCAGTCTGTAGCCACTGTGGCCGGGAACGGGAAGAGCACTGGGGAGCA
TCACGTGCTGTGGGTCAGTCACGTGCTCAGCAATGCTGAAGGTAGTCAAACACCCCTGGATGCCTTCCAG
CTTCCAGCTATTGTGTCTCAGGAGGAGCCATCCAGGCCAGGCCCAGAGCCCACAGAGGAAGAGCCTCCAG
TTGACGGGAAGCAGGCTGTGCCTGCGGACCAGGACAAGGACAAGGACCCTCAGGCCCGAGGCAAACGCAT
CAAAGTGGAGGCCAGCCCGAAGGAAGCTAGAGGCTCAGAGGACAGTGGAGAAGAGGAGCTCTCGGATCCA
CCGGCTCCACCTCGGCCAGAATTCACTTCTGTCATCCGGGCGGGAGCCCTGAAGCATGATCCAGTGCTGC
CGTGGGGCTTGACAACTCCCGGAGACCCCTCACCCGCCCTCCTTCATGCAGGCTTCCTGCCACCCGTTGT
GCGGGGCCTGTGCACCCCAGGCACCATCCGCTATGGCCCTGCGGAGTTGAGCCTGATGTATCCACATCTG
CACAGGCTGGGCGCAGGCCCCTCGCTTCCAGAGGCCTTTTACCCTACGCTGGGCTTGCCCTATCCGGGGC
CCACAGGTACTAGGGTGCAGCGGAAGGGAGACTGA

Translation (594 aa):
MATPYPRSGGRGEVKCGGGRGAGVPWDFLPGLMVKAPPGPCLQAQRKEKSRNAARWRRGKENLEFFELAK
LLPLPGAISSQLDKASIVRLSVTYLRLRRFAALGAPPWGLRAVGPPAGLAPGRRGPVALVSEVFEQHLGG
HILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYIHPGDHSEVLEQLGLRAASIGPPTP
PSVSSSSSSSSSSLVDTPEIEASPTEASPAFRAQERSFFVRMKSTLTKRGLNVKASGYKVIHVTGRLRAR
ALGLVALGHTLPPAPLAELPLHGHMIVFRLSLGLTILACESRVSDHMDMGPSELVGRSCYQFVHGQDATR
IRQSHLDLLDKGQVVTGYYRWLQRAGGFVWLQSVATVAGNGKSTGEHHVLWVSHVLSNAEGSQTPLDAFQ
LPAIVSQEEPSRPGPEPTEEEPPVDGKQAVPADQDKDKDPQARGKRIKVEASPKEARGSEDSGEEELSDP
PAPPRPEFTSVIRAGALKHDPVLPWGLTTPGDPSPALLHAGFLPPVVRGLCTPGTIRYGPAELSLMYPHL
HRLGAGPSLPEAFYPTLGLPYPGPTGTRVQRKGD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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