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Report for CCDS13434.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13434.1 Public Homo sapiens 20 DPM1 24 110 108 CCDS HistoryNCBI Gene:8813Re-query CCDS DB by CCDS ID:13434.1Re-query CCDS DB by GeneID:8813See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13434.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371588.10 ENSP00000360644.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371588.10Link to Ensembl Protein Viewer:ENSP00000360644.5Re-query CCDS DB by Nucleotide ID:ENST00000371588Re-query CCDS DB by Protein ID:ENSP00000360644
Original member Current member NCBI NM_003859.3 NP_003850.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003859.3Link to Protein Sequence:NP_003850.1Re-query CCDS DB by Nucleotide ID:NM_003859Re-query CCDS DB by Protein ID:NP_003850Link to BLAST:NP_003850.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003850.1 260 O60762 260 100% 0 0

Chromosomal Locations for CCDS 13434.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 50935132 50935236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 50936148 50936262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 50940865 50940933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 50942031 50942126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 50945737 50945762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 50945847 50945923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 50948629 50948662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 50955186 50955285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 50958363 50958523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (783 nt):
ATGGCCTCCTTGGAAGTCAGTCGTAGTCCTCGCAGGTCTCGGCGGGAGCTGGAAGTGCGCAGTCCACGAC
AGAACAAATATTCGGTGCTTTTACCTACCTACAACGAGCGCGAGAACCTGCCGCTCATCGTGTGGCTGCT
GGTGAAAAGCTTCTCCGAGAGTGGAATCAACTATGAAATTATAATCATAGATGATGGAAGCCCAGATGGA
ACAAGGGATGTTGCTGAACAGTTGGAGAAGATCTATGGGTCAGACAGAATTCTTCTAAGACCACGAGAGA
AAAAGTTGGGACTAGGAACTGCATATATTCATGGAATGAAACATGCCACAGGAAACTACATCATTATTAT
GGATGCTGATCTCTCACACCATCCAAAATTTATTCCTGAATTTATTAGGAAGCAAAAGGAGGGTAATTTT
GATATTGTCTCTGGAACTCGCTACAAAGGAAATGGAGGTGTATATGGCTGGGATTTGAAAAGAAAAATAA
TCAGCCGTGGGGCCAATTTTTTAACTCAGATCTTGCTGAGACCAGGAGCATCTGATTTAACAGGAAGTTT
CAGATTATACCGAAAAGAAGTTCTAGAGAAATTAATAGAAAAATGTGTTTCTAAAGGCTACGTCTTCCAG
ATGGAGATGATTGTTCGGGCAAGACAGTTGAATTATACTATTGGCGAGGTTCCAATATCATTTGTGGATC
GTGTTTATGGTGAATCCAAGTTGGGAGGAAATGAAATAGTATCTTTCTTGAAAGGATTATTGACTCTTTT
TGCTACTACATAA

Translation (260 aa):
MASLEVSRSPRRSRRELEVRSPRQNKYSVLLPTYNERENLPLIVWLLVKSFSESGINYEIIIIDDGSPDG
TRDVAEQLEKIYGSDRILLRPREKKLGLGTAYIHGMKHATGNYIIIMDADLSHHPKFIPEFIRKQKEGNF
DIVSGTRYKGNGGVYGWDLKRKIISRGANFLTQILLRPGASDLTGSFRLYRKEVLEKLIEKCVSKGYVFQ
MEMIVRARQLNYTIGEVPISFVDRVYGESKLGGNEIVSFLKGLLTLFATT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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