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Report for CCDS16962.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16962.1 Public Mus musculus 2 Nfs1 23 108 98 CCDS HistoryNCBI Gene:18041Re-query CCDS DB by CCDS ID:16962.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16962.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029147.15 ENSMUSP00000029147.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029147.15Link to Ensembl Protein Viewer:ENSMUSP00000029147.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000029147Re-query CCDS DB by Protein ID:ENSMUSP00000029147
Original member NCBI NM_010911.2 NP_035041.2 Updated not alive Link to Nucleotide Sequence:NM_010911.2Link to Protein Sequence:NP_035041.2Re-query CCDS DB by Nucleotide ID:NM_010911Re-query CCDS DB by Protein ID:NP_035041
Current member NCBI NM_010911.3 NP_035041.2 Accepted alive Link to Nucleotide Sequence:NM_010911.3Link to Protein Sequence:NP_035041.2Re-query CCDS DB by Nucleotide ID:NM_010911Re-query CCDS DB by Protein ID:NP_035041Link to BLAST:NP_035041.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035041.2 459 Q9Z1J3 459 100% 0 0

Chromosomal Locations for CCDS 16962.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 156124264 156124327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156125281 156125370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156126319 156126402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156127011 156127092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156127666 156127771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156128438 156128595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156131653 156131787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156132633 156132726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156134406 156134558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156139729 156139812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156142126 156142242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156143367 156143458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156144020 156144140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1380 nt):
ATGGTGGGCTCTGTGGCTGGGAACATGCTGCTGCGAGCCGCTTGGAGGCGGGCGTCGTTGGCGGCTACCT
CCTTGGCCCTGGGAAGGTCCTCGGTGCCCACCCGGGGACTGCGCCTGCGCGTTGTAGATCATGGCCCCCA
TTCGCCTGTTCACTCAGAGGCAGAGGCAGTGCTGCGACCTCTCTACATGGACGTACAGGCCACCACTCCT
CTGGATCCCAGAGTGCTTGATGCCATGCTCCCATACCTTGTCAACTACTATGGGAACCCTCATTCTCGGA
CTCATGCATATGGCTGGGAGAGCGAGGCAGCCATGGAACGTGCTCGCCAGCAAGTAGCATCTCTGATTGG
AGCTGATCCTCGGGAGATCATTTTCACTAGTGGAGCTACTGAGTCCAACAACATAGCAATTAAGGGAGTG
GCCAGGTTCTACAGGTCAAGGAAAAAACACTTGGTCACAACCCAGACAGAACACAAATGTGTGCTGGATT
CCTGCCGCTCCCTGGAAGCTGAGGGCTTTCGGGTCACTTACCTCCCTGTGCAGAAGAGCGGGATCATTGA
CTTAAAGGAACTAGAGGCTGCCATCCAGCCAGACACCAGCCTGGTCTCCGTTATGACTGTGAACAATGAA
ATTGGAGTAAAGCAACCAATTGCAGAAATAGGGCAGATTTGTAGTTCCAGAAAGGTGTACTTCCACACTG
ATGCCGCCCAAGCGGTTGGGAAAATCCCACTTGACGTCAATGACATGAAGATTGATCTCATGAGCATCAG
CGGTCACAAACTCTATGGCCCTAAAGGGGTTGGTGCTATCTATATCCGCCGTAGGCCCCGGGTACGTGTG
GAGGCCCTACAGAGTGGAGGCGGGCAGGAGCGGGGTATGCGGTCTGGGACAGTGCCCACACCCTTGGTGG
TGGGCCTGGGAGCTGCATGTGAGTTGGCACAACAAGAGATGGAATACGACCATAAGCGGATCTCAAAGTT
AGCAGAGCGACTGGTACAGAACATAATGAAGAATCTTCCAGATGTGGTAATGAACGGGGACCCGAAGCAG
CACTACCCTGGCTGTATCAACCTCTCCTTCGCGTATGTGGAAGGAGAGAGCCTGCTGATGGCCCTCAAGG
ATGTGGCCTTGTCCTCAGGGAGTGCCTGCACTTCTGCATCATTGGAGCCCTCTTATGTCCTCAGAGCAAT
TGGTACCGATGAGGATTTAGCACACTCCTCTATCAGGTTTGGCATCGGCCGCTTCACTACAGAAGAGGAG
GTGGACTACACGGCGGAGAAGTGCATCCACCACGTGAAGCGCCTTCGAGAAATGAGTCCTCTCTGGGAGA
TGGTCCAGGATGGCATTGACCTCAAGAGCATCAAGTGGACCCAGCATTAG

Translation (459 aa):
MVGSVAGNMLLRAAWRRASLAATSLALGRSSVPTRGLRLRVVDHGPHSPVHSEAEAVLRPLYMDVQATTP
LDPRVLDAMLPYLVNYYGNPHSRTHAYGWESEAAMERARQQVASLIGADPREIIFTSGATESNNIAIKGV
ARFYRSRKKHLVTTQTEHKCVLDSCRSLEAEGFRVTYLPVQKSGIIDLKELEAAIQPDTSLVSVMTVNNE
IGVKQPIAEIGQICSSRKVYFHTDAAQAVGKIPLDVNDMKIDLMSISGHKLYGPKGVGAIYIRRRPRVRV
EALQSGGGQERGMRSGTVPTPLVVGLGAACELAQQEMEYDHKRISKLAERLVQNIMKNLPDVVMNGDPKQ
HYPGCINLSFAYVEGESLLMALKDVALSSGSACTSASLEPSYVLRAIGTDEDLAHSSIRFGIGRFTTEEE
VDYTAEKCIHHVKRLREMSPLWEMVQDGIDLKSIKWTQH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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