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Report for CCDS27900.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27900.1 Public Mus musculus 15 Nfe2 23 108 98 CCDS HistoryNCBI Gene:18022Re-query CCDS DB by CCDS ID:27900.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27900.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075192.12 ENSMUSP00000074684.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075192.12Link to Ensembl Protein Viewer:ENSMUSP00000074684.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000075192Re-query CCDS DB by Protein ID:ENSMUSP00000074684
Original member Current member EBI ENSMUST00000156927.7 ENSMUSP00000114160.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000156927.7Link to Ensembl Protein Viewer:ENSMUSP00000114160.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000156927Re-query CCDS DB by Protein ID:ENSMUSP00000114160
Original member Current member EBI ENSMUST00000134554.1 ENSMUSP00000117474.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000134554.1Link to Ensembl Protein Viewer:ENSMUSP00000117474.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000134554Re-query CCDS DB by Protein ID:ENSMUSP00000117474
Original member Current member EBI ENSMUST00000149111.7 ENSMUSP00000122476.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000149111.7Link to Ensembl Protein Viewer:ENSMUSP00000122476.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000149111Re-query CCDS DB by Protein ID:ENSMUSP00000122476
Original member NCBI NM_001302338.1 NP_001289267.1 Updated not alive Link to Nucleotide Sequence:NM_001302338.1Link to Protein Sequence:NP_001289267.1Re-query CCDS DB by Nucleotide ID:NM_001302338Re-query CCDS DB by Protein ID:NP_001289267
Current member NCBI NM_001302338.2 NP_001289267.1 Accepted alive Link to Nucleotide Sequence:NM_001302338.2Link to Protein Sequence:NP_001289267.1Re-query CCDS DB by Nucleotide ID:NM_001302338Re-query CCDS DB by Protein ID:NP_001289267Link to BLAST:NP_001289267.1
Original member NCBI NM_001302339.1 NP_001289268.1 Updated not alive Link to Nucleotide Sequence:NM_001302339.1Link to Protein Sequence:NP_001289268.1Re-query CCDS DB by Nucleotide ID:NM_001302339Re-query CCDS DB by Protein ID:NP_001289268
Current member NCBI NM_001302339.2 NP_001289268.1 Accepted alive Link to Nucleotide Sequence:NM_001302339.2Link to Protein Sequence:NP_001289268.1Re-query CCDS DB by Nucleotide ID:NM_001302339Re-query CCDS DB by Protein ID:NP_001289268Link to BLAST:NP_001289268.1
Original member NCBI NM_001302340.1 NP_001289269.1 Updated not alive Link to Nucleotide Sequence:NM_001302340.1Link to Protein Sequence:NP_001289269.1Re-query CCDS DB by Nucleotide ID:NM_001302340Re-query CCDS DB by Protein ID:NP_001289269
Current member NCBI NM_001302340.2 NP_001289269.1 Accepted alive Link to Nucleotide Sequence:NM_001302340.2Link to Protein Sequence:NP_001289269.1Re-query CCDS DB by Nucleotide ID:NM_001302340Re-query CCDS DB by Protein ID:NP_001289269Link to BLAST:NP_001289269.1
Original member NCBI NM_001302341.1 NP_001289270.1 Updated not alive Link to Nucleotide Sequence:NM_001302341.1Link to Protein Sequence:NP_001289270.1Re-query CCDS DB by Nucleotide ID:NM_001302341Re-query CCDS DB by Protein ID:NP_001289270
Current member NCBI NM_001302341.2 NP_001289270.1 Accepted alive Link to Nucleotide Sequence:NM_001302341.2Link to Protein Sequence:NP_001289270.1Re-query CCDS DB by Nucleotide ID:NM_001302341Re-query CCDS DB by Protein ID:NP_001289270Link to BLAST:NP_001289270.1
Original member NCBI NM_001302343.1 NP_001289272.1 Updated not alive Link to Nucleotide Sequence:NM_001302343.1Link to Protein Sequence:NP_001289272.1Re-query CCDS DB by Nucleotide ID:NM_001302343Re-query CCDS DB by Protein ID:NP_001289272
Current member NCBI NM_001302343.2 NP_001289272.1 Accepted alive Link to Nucleotide Sequence:NM_001302343.2Link to Protein Sequence:NP_001289272.1Re-query CCDS DB by Nucleotide ID:NM_001302343Re-query CCDS DB by Protein ID:NP_001289272Link to BLAST:NP_001289272.1
Original member NCBI NM_008685.3 NP_032711.2 Updated not alive Link to Nucleotide Sequence:NM_008685.3Link to Protein Sequence:NP_032711.2Re-query CCDS DB by Nucleotide ID:NM_008685Re-query CCDS DB by Protein ID:NP_032711
Current member NCBI NM_008685.4 NP_032711.2 Accepted alive Link to Nucleotide Sequence:NM_008685.4Link to Protein Sequence:NP_032711.2Re-query CCDS DB by Nucleotide ID:NM_008685Re-query CCDS DB by Protein ID:NP_032711Link to BLAST:NP_032711.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001289267.1 373 Q07279 373 99.7319% 0 1
NP_001289268.1 373 Q07279 373 99.7319% 0 1
NP_001289269.1 373 Q07279 373 99.7319% 0 1
NP_001289270.1 373 Q07279 373 99.7319% 0 1
NP_001289272.1 373 Q07279 373 99.7319% 0 1
NP_032711.2 373 Q07279 373 99.7319% 0 1

Chromosomal Locations for CCDS 27900.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 103248441 103249448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103250929 103251042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1122 nt):
ATGCCCCCGTGTCCTCCTCAGCAGAACAGGAACAGGTTATCACAGCTGCCTGTTGGGGAGCTTGGAGAGA
TGGAACTGACTTGGCAAGAGATCATGTCCATTACTGAGCTGCAGGGTCTAAATGTTCCAAGTGAGACATC
TTTTGAGCCTCAAGCACCCACCCCATACCCTGGGCCACTGCCACCTCCAACATATTGCCCCTGTTCAATT
CATCCAGATGCAGGCTTCTCCCTTCCCCCACCATCTTATGAGCTCCCAGCATCTACTCCCCATGTCCCAG
AACTACCATACTCCTATGGTAATGTAGCCATACCAGTGTCAAAGCCACTTACCCTTTCAGGCCTGCTCAA
TGAGCCCCTCCCAGACCACTTAGCTCTCCTGGACATTGGGCTGCCAGTGGGGCAACCCAAGCCCCAAGAA
GACCCAGAATCTGACTCAGGATTATCCCTCAACTACAGTGATGCAGAATCTCTTGAGCTAGAGGGTATGG
AGGCTGGCAGGCGGAGGAGCGAGTACGCGGACATGTACCCAGTGGAGTATCCTTACTCACTTATGCCCAA
TTCTTTGGCCCATCCCAACTATACTCTTCCACCCACTGAGACACCCTTGGCCTTAGAGTCATCCTCCGGT
CCAGTTCGGGCTAAGCCTGCTGTCCGTGGGGAGGCAGGGAGTCGGGACGAGCGGCGAGCCCTGGCCATGA
AGATTCCTTTCCCTACGGACAAGATAGTTAACTTGCCGGTAGATGACTTTAATGAGTTGTTGGCACAGTA
TCCGCTAACGGAGAGCCAGCTGGCTCTAGTTCGGGACATCCGTCGACGGGGCAAGAACAAGGTGGCAGCC
CAAAACTGTCGCAAGAGAAAACTGGAAACCATTGTGCAGCTGGAGCGAGAGCTGGAGCGGCTGAGCAGTG
AAAGGGAGCGGCTTCTCAGAGCCCGAGGGGAGGCTGACCGCACTCTGGAGGTCATGCGCCAACAGCTGGC
AGAGCTGTACCATGATATTTTCCAGCATCTTCGGGATGAATCTGGCAACAGTTACTCACCAGAGGAATAT
GTACTGCAACAGGCTGCTGATGGTGCCATCTTTCTGGTACCCCGTGGAACCAAAATGGAGGCTACAGATT
GA

Translation (373 aa):
MPPCPPQQNRNRLSQLPVGELGEMELTWQEIMSITELQGLNVPSETSFEPQAPTPYPGPLPPPTYCPCSI
HPDAGFSLPPPSYELPASTPHVPELPYSYGNVAIPVSKPLTLSGLLNEPLPDHLALLDIGLPVGQPKPQE
DPESDSGLSLNYSDAESLELEGMEAGRRRSEYADMYPVEYPYSLMPNSLAHPNYTLPPTETPLALESSSG
PVRAKPAVRGEAGSRDERRALAMKIPFPTDKIVNLPVDDFNELLAQYPLTESQLALVRDIRRRGKNKVAA
QNCRKRKLETIVQLERELERLSSERERLLRARGEADRTLEVMRQQLAELYHDIFQHLRDESGNSYSPEEY
VLQQAADGAIFLVPRGTKMEATD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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