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Report for CCDS21277.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21277.1 Public Mus musculus 7 Myod1 23 108 98 CCDS HistoryNCBI Gene:17927Re-query CCDS DB by CCDS ID:21277.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21277.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072514.2 ENSMUSP00000072330.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072514.2Link to Ensembl Protein Viewer:ENSMUSP00000072330.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000072514Re-query CCDS DB by Protein ID:ENSMUSP00000072330
Original member Current member NCBI NM_010866.2 NP_034996.2 Accepted alive Link to Nucleotide Sequence:NM_010866.2Link to Protein Sequence:NP_034996.2Re-query CCDS DB by Nucleotide ID:NM_010866Re-query CCDS DB by Protein ID:NP_034996Link to BLAST:NP_034996.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034996.2 318 P10085 318 100% 0 0

Chromosomal Locations for CCDS 21277.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 46376673 46377299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46377740 46377818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46378144 46378394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (957 nt):
ATGGAGCTTCTATCGCCGCCACTCCGGGACATAGACTTGACAGGCCCCGACGGCTCTCTCTGCTCCTTTG
AGACAGCAGACGACTTCTATGATGACCCGTGTTTCGACTCACCAGACCTGCGCTTTTTTGAGGACCTGGA
CCCGCGCCTGGTGCACATGGGAGCCCTCCTGAAACCGGAGGAGCACGCACACTTCCCTACTGCGGTGCAC
CCAGGCCCAGGCGCTCGTGAGGATGAGCATGTGCGCGCGCCCAGCGGGCACCACCAGGCGGGTCGCTGCT
TGCTGTGGGCCTGCAAGGCGTGCAAGCGCAAGACCACCAACGCTGATCGCCGCAAGGCCGCCACCATGCG
CGAGCGCCGCCGCCTGAGCAAAGTGAATGAGGCCTTCGAGACGCTCAAGCGCTGCACGTCCAGCAACCCG
AACCAGCGGCTACCCAAGGTGGAGATCCTGCGCAACGCCATCCGCTACATCGAAGGTCTGCAGGCTCTGC
TGCGCGACCAGGACGCCGCGCCCCCTGGCGCCGCTGCCTTCTACGCACCTGGACCGCTGCCCCCAGGCCG
TGGCAGCGAGCACTACAGTGGCGACTCAGATGCATCCAGCCCGCGCTCCAACTGCTCTGATGGCATGATG
GATTACAGCGGCCCCCCAAGCGGCCCCCGGCGGCAGAATGGCTACGACACCGCCTACTACAGTGAGGCGG
CGCGCGAGTCCAGGCCAGGGAAGAGTGCGGCTGTGTCGAGCCTCGACTGCCTGTCCAGCATAGTGGAGCG
CATCTCCACAGACAGCCCCGCTGCGCCTGCGCTGCTTTTGGCAGATGCACCACCAGAGTCGCCTCCGGGT
CCGCCAGAGGGGGCATCCCTAAGCGACACAGAACAGGGAACCCAGACCCCGTCTCCCGACGCCGCCCCTC
AGTGTCCTGCAGGCTCAAACCCCAATGCGATTTATCAGGTGCTTTGA

Translation (318 aa):
MELLSPPLRDIDLTGPDGSLCSFETADDFYDDPCFDSPDLRFFEDLDPRLVHMGALLKPEEHAHFPTAVH
PGPGAREDEHVRAPSGHHQAGRCLLWACKACKRKTTNADRRKAATMRERRRLSKVNEAFETLKRCTSSNP
NQRLPKVEILRNAIRYIEGLQALLRDQDAAPPGAAAFYAPGPLPPGRGSEHYSGDSDASSPRSNCSDGMM
DYSGPPSGPRRQNGYDTAYYSEAARESRPGKSAAVSSLDCLSSIVERISTDSPAAPALLLADAPPESPPG
PPEGASLSDTEQGTQTPSPDAAPQCPAGSNPNAIYQVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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