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Report for CCDS23612.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23612.1 Public Mus musculus 9 Myd88 23 108 98 CCDS HistoryNCBI Gene:17874Re-query CCDS DB by CCDS ID:23612.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23612.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035092.6 ENSMUSP00000035092.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035092.6Link to Ensembl Protein Viewer:ENSMUSP00000035092.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000035092Re-query CCDS DB by Protein ID:ENSMUSP00000035092
Original member Current member NCBI NM_010851.3 NP_034981.1 Accepted alive Link to Nucleotide Sequence:NM_010851.3Link to Protein Sequence:NP_034981.1Re-query CCDS DB by Nucleotide ID:NM_010851Re-query CCDS DB by Protein ID:NP_034981Link to BLAST:NP_034981.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034981.1 296 P22366-1 296 100% 0 0

Chromosomal Locations for CCDS 23612.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 119337356 119337510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119337754 119337845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119338006 119338186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119338576 119338710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119339632 119339959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (891 nt):
ATGTCTGCGGGAGACCCCCGCGTGGGATCCGGGTCCCTGGACTCCTTCATGTTCTCCATACCCTTGGTCG
CGCTTAACGTGGGAGTGAGGCGCCGCCTATCGCTGTTCTTGAACCCTCGGACGCCCGTGGCGGCCGACTG
GACCTTGCTGGCGGAGGAGATGGGCTTCGAGTACTTGGAGATCCGAGAGCTGGAAACGCGCCCTGACCCC
ACTCGCAGTTTGTTGGATGCCTGGCAGGGGCGCTCTGGCGCGTCTGTCGGCAGGCTGCTAGAGCTGCTGG
CCTTGTTAGACCGTGAGGATATACTGAAGGAGCTGAAGTCGCGCATCGAGGAGGACTGCCAGAAATACTT
AGGTAAGCAGCAGAACCAGGAGTCCGAGAAGCCTTTACAGGTGGCCAGAGTGGAAAGCAGTGTCCCACAA
ACAAAGGAACTGGGAGGCATCACCACCCTTGATGACCCCCTAGGACAAACGCCGGAACTTTTCGATGCCT
TTATCTGCTACTGCCCCAACGATATCGAGTTTGTGCAGGAGATGATCCGGCAACTAGAACAGACAGACTA
TCGGCTTAAGTTGTGTGTGTCCGACCGTGACGTCCTGCCGGGCACCTGTGTCTGGTCCATTGCCAGCGAG
CTAATTGAGAAAAGGTGTCGCCGCATGGTGGTGGTTGTTTCTGACGATTATCTACAGAGCAAGGAATGTG
ACTTCCAGACCAAGTTTGCACTCAGCCTGTCTCCAGGTGTCCAACAGAAGCGACTGATTCCTATTAAATA
CAAGGCGATGAAGAAGGACTTTCCCAGTATCCTGCGGTTCATCACTATATGCGACTATACCAACCCTTGC
ACCAAGTCCTGGTTCTGGACCCGCCTTGCCAAGGCTTTGTCCCTGCCCTGA

Translation (296 aa):
MSAGDPRVGSGSLDSFMFSIPLVALNVGVRRRLSLFLNPRTPVAADWTLLAEEMGFEYLEIRELETRPDP
TRSLLDAWQGRSGASVGRLLELLALLDREDILKELKSRIEEDCQKYLGKQQNQESEKPLQVARVESSVPQ
TKELGGITTLDDPLGQTPELFDAFICYCPNDIEFVQEMIRQLEQTDYRLKLCVSDRDVLPGTCVWSIASE
LIEKRCRRMVVVVSDDYLQSKECDFQTKFALSLSPGVQQKRLIPIKYKAMKKDFPSILRFITICDYTNPC
TKSWFWTRLAKALSLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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