NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS18230.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18230.1 Public Mus musculus 4 Mup2 23 108 98 CCDS HistoryNCBI Gene:17841Re-query CCDS DB by CCDS ID:18230.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18230.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074700.8 ENSMUSP00000074264.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074700.8Link to Ensembl Protein Viewer:ENSMUSP00000074264.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000074700Re-query CCDS DB by Protein ID:ENSMUSP00000074264
Original member Current member EBI ENSMUST00000107490.4 ENSMUSP00000126948.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107490.4Link to Ensembl Protein Viewer:ENSMUSP00000126948.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107490Re-query CCDS DB by Protein ID:ENSMUSP00000126948
Original member Current member NCBI NM_001045550.2 NP_001039015.1 Accepted alive Link to Nucleotide Sequence:NM_001045550.2Link to Protein Sequence:NP_001039015.1Re-query CCDS DB by Nucleotide ID:NM_001045550Re-query CCDS DB by Protein ID:NP_001039015Link to BLAST:NP_001039015.1
Original member Current member NCBI NM_008647.4 NP_032673.3 Accepted alive Link to Nucleotide Sequence:NM_008647.4Link to Protein Sequence:NP_032673.3Re-query CCDS DB by Nucleotide ID:NM_008647Re-query CCDS DB by Protein ID:NP_032673Link to BLAST:NP_032673.3

Chromosomal Locations for CCDS 18230.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 60136995 60137020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 60137184 60137285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 60137627 60137737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 60138387 60138460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 60139219 60139352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 60139691 60139786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (543 nt):
ATGAAGATGCTGCTGCTGCTGTGTTTGGGACTGACCCTAGTCTGTGTCCATGCAGAAGAAGCTAGTTCTA
CGGGAAGGAACTTTAATGTACAAAAGATTAATGGGGAATGGCATACTATTATCCTGGCCTCTGACAAAAG
AGAAAAGATAGAAGATAATGGCAACTTTAGACTTTTTCTGGAGCAAATCCATGTCTTGGAGAATTCCTTA
GTTCTTAAATTCCATACTGTAAGAGATGAAGAGTGCTCGGAATTATCTATGGTTGCTGACAAAACAGAAA
AGGCTGGTGAATATTCTGTGACGTATGATGGATTCAATACATTTACTATACCTAAGACAGACTATGATAA
CTTTCTTATGGCTCATCTCATTAACGAAAAGGATGGGGAAACCTTCCAGCTGATGGGGCTCTATGGCCGA
GAACCAGATTTGAGTTCAGACATCAAGGAAAGGTTTGCACAACTATGTGAGGAGCATGGAATCCTTAGAG
AAAATATCATTGACCTATCCAATGCCAATCGCTGCCTCCAGGCCCGAGAATGA

Translation (180 aa):
MKMLLLLCLGLTLVCVHAEEASSTGRNFNVQKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLENSL
VLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGR
EPDLSSDIKERFAQLCEEHGILRENIIDLSNANRCLQARE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH