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Report for CCDS29780.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29780.1 Public Mus musculus 19 Cyp26a1 23 108 98 CCDS HistoryNCBI Gene:13082Re-query CCDS DB by CCDS ID:29780.1Re-query CCDS DB by GeneID:13082See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29780.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025946.6 ENSMUSP00000025946.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025946.6Link to Ensembl Protein Viewer:ENSMUSP00000025946.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000025946Re-query CCDS DB by Protein ID:ENSMUSP00000025946
Original member Current member NCBI NM_007811.2 NP_031837.2 Accepted alive Link to Nucleotide Sequence:NM_007811.2Link to Protein Sequence:NP_031837.2Re-query CCDS DB by Nucleotide ID:NM_007811Re-query CCDS DB by Protein ID:NP_031837Link to BLAST:NP_031837.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031837.2 497 O55127 497 99.3964% 0 3

Chromosomal Locations for CCDS 29780.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 37697910 37698098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 37698291 37698515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 37698781 37699071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 37699151 37699309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 37699896 37700030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 37700618 37700770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 37701010 37701351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1494 nt):
ATGGGGCTCCCGGCGCTGCTGGCCAGTGCGCTCTGCACCTTCGTGCTGCCGCTGCTGCTCTTCCTGGCGG
CGCTCAAGCTCTGGGACCTGTACTGTGTGAGCAGCCGCGATCGCAGCTGCGCCCTCCCCTTGCCCCCCGG
TACCATGGGCTTCCCATTCTTTGGGGAAACATTGCAGATGGTGCTTCAGCGGAGGAAGTTTCTGCAGATG
AAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCG
CGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCG
CACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAGGTGATT
ATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTC
TGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCG
CATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTC
GTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGT
ACCGGGGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCG
GCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAG
AGGGGAGAGAGGCTGGATATGCAGGCACTAAAACAATCGTCAACAGAGCTCCTCTTTGGTGGTCATGAAA
CTACAGCCAGTGCTGCGACGTCACTGATCACTTACCTAGGACTCTACCCACATGTCCTCCAGAAAGTTCG
AGAAGAGATAAAGAGCAAGGGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTG
GAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGT
TTCGGGTTGCTCTGAAGACTTTTGAGCTGAATGGATACCAGATCCCCAAGGGCTGGAATGTTATTTACAG
TATCTGTGACACCCACGATGTGGCAGATATCTTCACTAACAAGGAGGAATTTAATCCCGACCGCTTTATA
GTGCCTCATCCAGAGGATGCTTCCCGGTTCAGCTTCATTCCATTTGGAGGAGGCCTTCGGAGCTGTGTAG
GCAAAGAGTTTGCAAAAATTCTTCTTAAGATATTTACAGTGGAGCTGGCTAGGCACTGTGATTGGCAGCT
TCTAAATGGACCTCCTACAATGAAGACAAGCCCCACTGTGTACCCTGTGGACAATCTCCCTGCAAGATTT
ACCCACTTCCAGGGAGATATCTGA

Translation (497 aa):
MGLPALLASALCTFVLPLLLFLAALKLWDLYCVSSRDRSCALPLPPGTMGFPFFGETLQMVLQRRKFLQM
KRRKYGFIYKTHLFGRPTVRVMGADNVRRILLGEHRLVSVHWPASVRTILGAGCLSNLHDSSHKQRKKVI
MQAFSREALQCYVPVIAEEVSSCLEQWLSCGERGLLVYPEVKRLMFRIAMRILLGCEPGPAGGGEDEQQL
VEAFEEMTRNLFSLPIDVPFSGLYRGVKARNLIHARIEENIRAKIRRLQATEPDGGCKDALQLLIEHSWE
RGERLDMQALKQSSTELLFGGHETTASAATSLITYLGLYPHVLQKVREEIKSKGLLCKSNQDNKLDMETL
EQLKYTGCVIKETLRLNPPVPGGFRVALKTFELNGYQIPKGWNVIYSICDTHDVADIFTNKEEFNPDRFI
VPHPEDASRFSFIPFGGGLRSCVGKEFAKILLKIFTVELARHCDWQLLNGPPTMKTSPTVYPVDNLPARF
THFQGDI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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