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Report for CCDS35227.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35227.1 Public Homo sapiens X FAM47C 24 110 108 CCDS HistoryNCBI Gene:442444Re-query CCDS DB by CCDS ID:35227.1Re-query CCDS DB by GeneID:442444See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35227.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000358047.5 ENSP00000367913.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000358047.5Link to Ensembl Protein Viewer:ENSP00000367913.3Re-query CCDS DB by Nucleotide ID:ENST00000358047Re-query CCDS DB by Protein ID:ENSP00000367913
Original member Current member NCBI NM_001013736.3 NP_001013758.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001013736.3Link to Protein Sequence:NP_001013758.1Re-query CCDS DB by Nucleotide ID:NM_001013736Re-query CCDS DB by Protein ID:NP_001013758Link to BLAST:NP_001013758.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001013758.1 1035 Q5HY64 1035 100% 0 0

Chromosomal Locations for CCDS 35227.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 37008411 37011518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3108 nt):
ATGGGGGACCAGAGGCCGCAGGACCGGCCCAGTTCCCCGGGCATGGACTCCACGCCCTGGTACTGTGACA
AACCGCCTTCCAAGTACTTCGCGAAGCGCAAGCACAGGCGCCTGAGGTTCCCGCCTGTGGACACCCAGAA
CTGGGTATTTGTGACGGAGGGCATGGACGACTTCCGCTACGGCTGTCAGTCTCCTGAAGATACGCTTGTT
TGTCGCCGTGACGAGTTTTTACTCCCCAAAATATCTCTCAGAGGTCCCCAAGCTGACCCCAAAAGCAGGA
AGAAAAAGCTGCTCAAGAAAGCGGCCCTGTTTTCCAAGCTCTCGCCAGCACAGCCAGCACGGAAGGCGTT
CGTAGAGGAAGTGGAAGCCCAGCTGATGACCAAGCATCCCTTGGCCATGTACCCCAATCTGGGAGAAGAT
ATGCCTCCAGATCTCCTACTACAGGTACTGAAACCGCTGGACCCTGAGAGGAAGCTGGAGGACGCAGGCT
CTTGTGAGGGCCAGGAGAAGACAACTGACGAACCCACGGAGCCTGGTAAATACCCCTGTGGGGAATTCTC
CCCTCGGCCTCCCGAGACTCGGGTGTCCTGTCTCCCCCCGGAGCCTCCCAAGACTCCGGTGTCCAGTCTC
CGCCCGGAGCCTCCAGAGACTGGAGTGTCCCATCTCCGCCCACAGCCTCCCAAGACTCAGGTGTCCAGTC
TCCACCTGGAGCCTCCAGAGACTGGAGTGTCCCATCTCCGCCCAGAGCCTCCCAAGACTCAGGTGTCCAG
TCTCCACCTGGAGCCTCCCGAGACTGGAGTGTCCCATCTCTACCTGGAGCCTCCTGGGACTGGAGTGTCT
CATCTCTGCCCAGAGCCTCCCAAGACTCGCGTATCTCATCTCCATCGGGAGCCTCCTGAGACTGGAGTGC
CTGATCTCTGCCTGGAGCCTCCCAAGTCACGCGTATCTCATCTCCGCCCAGAGCCTTCTGAGACTGGAGT
GTCCCATCTCCACCCAGAGCCTCCCAAGACTCTGGTGTCCAGTCTCCACCCAGAGCCTCCCGAGACTGGA
GTGTCCCATCTCTGCCCGGAACCTCCAGAGACTCGCGTATCTCCTCTCCGCCAGCTGCCTCCCGAGGCTG
GAGTGTCCCATCTCTGCCCGGAACCTCCCAAGACTCGCGTACCTCCTCTCCGCCCAGAGACCCCCAAGAA
TGGAGTGTCTCCTCTCTTCCCGGAGCCTCCCAAGACTCGCATATCTAATCTCCGCTCGGAGCCTCCCAAG
ATTGGAGTGTCCCATCTCTGCCTGGAGCCTCCCAAGACTCGCGGATCTCATCTCCGCCCGGAACCTCCTG
AGACTGGAGTGTCCCATCTCCGCCCAGAGCCTCCCAAGACTCGGGTGTCCAGTCTCCACCTGGAGCCTCC
TGAGACTGGAGTGTCCCATCTCTGCCCGGAGCCTCCAGAGAAGGACGTATCTCATCTCCGCCCAGAGCCT
CCCGACACTGGAGTGTCCCATCTCTGCCCAGAGCCCCCCAAGACACGCGTATCTCATCTCCGCCCAGAGC
CTTCTGAGACTGGAGTGTCCCATCTCCGCCCAGAGCCTCCCAAGATTCTGGTGTCCAGTCTCCACCAGGC
ACCTCCTGAGAGTAGCGTATCTCATCTCCGCCCAGAGCCTCCTGAGACTGGAGTGTCCCATCTCCGCCCA
GAGCCTCCCAAGACTCGGATGTACAGTCTCCGCCCGGAGCCTCCCGATACTGGAGTGTCCCATCTCTGCC
CAGAGCCTCCCAAGACTCGGGTGTCCAGTCTCCCCCCGGAGCCCCCCGAGACTGGAGTGTCCCATCTCTG
CCCGGAGCCTCCAGAGACTCGCGTATCTCATCTCCGCCCAGAGCCTCCTGAGACTGGAGTGTCCCATCTC
CGCCCAGAGCCTCCCAAGACTCGGATGTACAGTCTCCGCCCGGAGCCTCCCAATACTGGAGTGTCCCATC
TCTGCCCAGAGCCTCCCAAGACTCGGGTGTCCAGTCTCCCCCCGGAGCCCCCCGAGACTGGAGTGTCCCA
TCTCTGCCCGGAGCCTCCAGAGACTCGCGTATCTCATCTCCGCCCAGAGCCTCCTGAGACTGGAGTGTCC
CGTCTCCACCCAGAGCCTCCCAAGACTCGGGTGTCCAGTCTCCACGCGGAGCCTCCTGAGAGTCGCGTAT
CTCATCTCTGCCCGGAGCCTCCTGAGACTGGAGTGTCCCATCTCCGCCCAGAGCCTCCCAAGCCTCGGGT
TTCCAGTCTCCGCCCAGAGCCTCTTGAGACTCGCGTATCTCATCTCCGCCCGGAGCCTCCTGAGACTGGA
GTGTCCCATCTCCACCCAGAGCTTCCCAAGCCTCGGGTATCCAGTCTCCACCTGGAGCCTCCCAAGACTC
GTCGAGTGTCCAGTCTCCGCCTGGAGCCTCCCAAGACTGGTCGGGTGTCCAGTCTCTGCCCGGAGCCTAC
CAAGACCGGAGCGTCCCATCTAAAAGAACTGTTTCAGGAAGGTACATCAAGCACAATGGAGTGTGTTTCT
GACTCTCTTCAACGTAGACACACATCGAGAAAACTCCGTGACTTCAAGTGGGCTGGAGACCTAGGAGTTA
ATGAAGAATCCATCAGCAGTCTGTTTGACTTTACCCCTGAGTGCAGAGCAACCTATCAAGACCAAAAGAA
TAAGAAGGCAAACGAGTGTTCCTCAGGGCTGAAGTACAGCATGGAGCTAGACGAAATGGATGAGGTCAAA
TTCTTCTCACAGGAAAAAGACTTGGACGGGAAAATCCAGAATGCACCAAATTCTCATAGTGCACAGCATG
TGAAGATGGGGTATGGAGCATGGTACCTCAAGCCTAAGTTGGGGAAAAAGCTAAGAAGTGATGAACCTTT
GATTGACCCCAAGCTCGTACTTGAAAAGCCTGATGAACCCGACATTCTTGACGGTCTTTATGGACCAATC
GCCTTTAAGGATTTCATTCTAAGCAAGGGCTATGAAATGCCTGGCATCATTCAAAGGCTGTTTGCCAGGA
GGGGATGGACTTATGACTCTGTTAAGACTCCTATTCAACGTGCAATGCAAGTTTACAAGTACAAAGAAGA
CGTCACAGATGCATCGGAAGAAGATTAG

Translation (1035 aa):
MGDQRPQDRPSSPGMDSTPWYCDKPPSKYFAKRKHRRLRFPPVDTQNWVFVTEGMDDFRYGCQSPEDTLV
CRRDEFLLPKISLRGPQADPKSRKKKLLKKAALFSKLSPAQPARKAFVEEVEAQLMTKHPLAMYPNLGED
MPPDLLLQVLKPLDPERKLEDAGSCEGQEKTTDEPTEPGKYPCGEFSPRPPETRVSCLPPEPPKTPVSSL
RPEPPETGVSHLRPQPPKTQVSSLHLEPPETGVSHLRPEPPKTQVSSLHLEPPETGVSHLYLEPPGTGVS
HLCPEPPKTRVSHLHREPPETGVPDLCLEPPKSRVSHLRPEPSETGVSHLHPEPPKTLVSSLHPEPPETG
VSHLCPEPPETRVSPLRQLPPEAGVSHLCPEPPKTRVPPLRPETPKNGVSPLFPEPPKTRISNLRSEPPK
IGVSHLCLEPPKTRGSHLRPEPPETGVSHLRPEPPKTRVSSLHLEPPETGVSHLCPEPPEKDVSHLRPEP
PDTGVSHLCPEPPKTRVSHLRPEPSETGVSHLRPEPPKILVSSLHQAPPESSVSHLRPEPPETGVSHLRP
EPPKTRMYSLRPEPPDTGVSHLCPEPPKTRVSSLPPEPPETGVSHLCPEPPETRVSHLRPEPPETGVSHL
RPEPPKTRMYSLRPEPPNTGVSHLCPEPPKTRVSSLPPEPPETGVSHLCPEPPETRVSHLRPEPPETGVS
RLHPEPPKTRVSSLHAEPPESRVSHLCPEPPETGVSHLRPEPPKPRVSSLRPEPLETRVSHLRPEPPETG
VSHLHPELPKPRVSSLHLEPPKTRRVSSLRLEPPKTGRVSSLCPEPTKTGASHLKELFQEGTSSTMECVS
DSLQRRHTSRKLRDFKWAGDLGVNEESISSLFDFTPECRATYQDQKNKKANECSSGLKYSMELDEMDEVK
FFSQEKDLDGKIQNAPNSHSAQHVKMGYGAWYLKPKLGKKLRSDEPLIDPKLVLEKPDEPDILDGLYGPI
AFKDFILSKGYEMPGIIQRLFARRGWTYDSVKTPIQRAMQVYKYKEDVTDASEED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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