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Report for CCDS1096.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1096.2 Public Homo sapiens 1 KRTCAP2 24 110 108 CCDS HistoryNCBI Gene:200185Re-query CCDS DB by CCDS ID:1096.2Re-query CCDS DB by GeneID:200185See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 1096.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000295682.6 ENSP00000295682.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000295682.6Link to Ensembl Protein Viewer:ENSP00000295682.5Re-query CCDS DB by Nucleotide ID:ENST00000295682Re-query CCDS DB by Protein ID:ENSP00000295682
Original member Current member NCBI NM_173852.4 NP_776251.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173852.4Link to Protein Sequence:NP_776251.2Re-query CCDS DB by Nucleotide ID:NM_173852Re-query CCDS DB by Protein ID:NP_776251Link to BLAST:NP_776251.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_776251.2 136 Q8N6L1-1 136 100% 0 0

Chromosomal Locations for CCDS 1096.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 155169440 155169560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155169791 155169857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155172565 155172628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155172738 155172892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155173221 155173224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (411 nt):
ATGGTGGTGGGTACGGGCACCTCGCTGGCGCTCTCCTCCCTCCTGTCCCTGCTGCTCTTTGCTGGGATGC
AGATGTACAGCCGTCAGCTGGCCTCCACCGAGTGGCTCACCATCCAGGGCGGCCTGCTTGGTTCGGGTCT
CTTCGTGTTCTCGCTCACTGCCTTCAATAATCTGGAGAATCTTGTCTTTGGCAAAGGATTCCAAGCAAAG
ATCTTCCCTGAGATTCTCCTGTGCCTCCTGTTGGCTCTCTTTGCATCTGGCCTCATCCACCGAGTCTGTG
TCACCACCTGCTTCATCTTCTCCATGGTTGGTCTGTACTACATCAACAAGATCTCCTCCACCCTGTACCA
GGCAGCAGCTCCAGTCCTCACACCAGCCAAGGTCACAGGCAAGAGCAAGAAGAGAAACTGA

Translation (136 aa):
MVVGTGTSLALSSLLSLLLFAGMQMYSRQLASTEWLTIQGGLLGSGLFVFSLTAFNNLENLVFGKGFQAK
IFPEILLCLLLALFASGLIHRVCVTTCFIFSMVGLYYINKISSTLYQAAAPVLTPAKVTGKSKKRN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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