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Report for CCDS12347.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12347.1 Public Homo sapiens 19 MED26 24 110 108 CCDS HistoryNCBI Gene:9441Re-query CCDS DB by CCDS ID:12347.1Re-query CCDS DB by GeneID:9441See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12347.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000263390.8 ENSP00000263390.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000263390.8Link to Ensembl Protein Viewer:ENSP00000263390.3Re-query CCDS DB by Nucleotide ID:ENST00000263390Re-query CCDS DB by Protein ID:ENSP00000263390
Original member Current member NCBI NM_004831.5 NP_004822.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004831.5Link to Protein Sequence:NP_004822.2Re-query CCDS DB by Nucleotide ID:NM_004831Re-query CCDS DB by Protein ID:NP_004822Link to BLAST:NP_004822.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004822.2 600 O95402-1 600 100% 0 0

Chromosomal Locations for CCDS 12347.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 16576027 16577682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16578335 16578409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16627872 16627943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1803 nt):
ATGACAGCGGCTCCGGCGTCTCCGCAGCAGATCAGGGACCGGCTGCTGCAGGCCATCGACCCCCAGAGCA
ACATCCGGAACATGGTGGCGGTGCTGGAAGTCATCTCCAGCCTGGAGAAATACCCTATTACCAAAGAGGC
ACTTGAGGAAACACGACTTGGGAAGCTCATCAACGACGTCCGCAAGAAAACCAAGAACGAGGAGCTCGCC
AAGCGGGCCAAGAAGCTGCTGCGGAGCTGGCAGAAGCTCATCGAGCCGGCACACCAGCATGAGGCGGCGC
TGCGGGGGCTGGCGGGGGCCACCGGCTCTGCCAACGGGGGCGCACACAACTGCCGGCCGGAGGTGGGGGC
GGCTGGCCCACCCAGGAGCATCCATGACCTGAAGAGCCGCAATGACCTCCAGAGGCTGCCCGGGCAGCGG
CTGGACAGGCTGGGCAGCCGCAAGCGCCGGGGTGACCAGCGTGACCTCGGCCACCCAGGGCCGCCACCCA
AGGTCTCCAAAGCTAGCCACGACCCCCTGGTCCCCAACTCATCCCCCCTCCCCACCAACGGGATCAGTGG
GAGTCCAGAGAGCTTCGCCAGCTCCCTGGATGGCAGTGGGCATGCAGGCCCAGAGGGCAGCCGCCTGGAG
CGTGACGAGAATGACAAGCACAGTGGCAAGATCCCCGTCAACGCCGTGCGACCGCACACCAGCTCCCCGG
GCCTGGGCAAGCCCCCTGGACCCTGCTTGCAGCCAAAGGCTTCGGTGCTGCAGCAGCTGGACAGGGTGGA
CGAGACTCCGGGGCCTCCCCATCCCAAGGGACCCCCTCGCTGCTCTTTCAGTCCTCGGAACTCACGGCAT
GAGGGCTCCTTTGCCCGGCAGCAGAGCTTGTATGCACCCAAGGGCTCCGTGCCCAGCCCCTCACCGCGGC
CCCAGGCACTCGATGCCACACAGGTGCCGTCACCGCTTCCACTGGCACAGCCGTCCACACCCCCCGTACG
GCGGCTCGAGCTGCTGCCCAGTGCGGAAAGCCCAGTGTGCTGGCTTGAGCAGCCTGAGAGCCACCAGCGG
CTGGCGGGGCCGGGCTGCAAGGCAGGGCTGTCCCCAGCCGAGCCCCTCCTGTCCCGGGCAGGCTTTTCCC
CAGACTCCTCCAAGGCGGACAGTGATGCTGCCTCCTCAGGGGGCTCGGACAGTAAAAAGAAGAAGAGGTA
CCGACCTCGAGACTATACGGTTAACTTGGACGGGCAGGTGGCTGAGGCGGGCGTCAAGCCTGTCCGGTTA
AAAGAGCGGAAGCTCACCTTTGACCCCATGACGAGACAGATCAAACCTCTGACCCAGAAAGAGCCAGTGC
GGGCAGACAGCCCTGTGCACATGGAGCAGCAGTCCAGGACAGAGCTGGACAAGCAGGAGGCCAAGGCCAG
CCTCCAGAGCCCCTTCGAACAGACGAACTGGAAGGAGCTGTCACGCAACGAGATCATCCAGTCCTACCTG
AGCCGGCAGAGCAGCCTGCTCTCATCATCGGGCGCGCAGACCCCAGGGGCTCACCACTTCATGTCTGAGT
ACCTGAAGCAGGAGGAGAGCACCCGGCAAGGGGCCAGGCAGCTGCATGTGCTGGTGCCTCAAAGCCCGCC
CACGGACCTCCCTGGTCTGACCCGGGAGGTCACACAGGACGATCTCGACAGAATCCAGGCCAGCCAGTGG
CCGGGGGTGAACGGGTGTCAGGACACACAGGGTAACTGGTATGACTGGACGCAGTGCATATCGCTCGATC
CGCACGGCGACGACGGGCGCTTGAACATTCTGCCTTATGTCTGCTTGGACTGA

Translation (600 aa):
MTAAPASPQQIRDRLLQAIDPQSNIRNMVAVLEVISSLEKYPITKEALEETRLGKLINDVRKKTKNEELA
KRAKKLLRSWQKLIEPAHQHEAALRGLAGATGSANGGAHNCRPEVGAAGPPRSIHDLKSRNDLQRLPGQR
LDRLGSRKRRGDQRDLGHPGPPPKVSKASHDPLVPNSSPLPTNGISGSPESFASSLDGSGHAGPEGSRLE
RDENDKHSGKIPVNAVRPHTSSPGLGKPPGPCLQPKASVLQQLDRVDETPGPPHPKGPPRCSFSPRNSRH
EGSFARQQSLYAPKGSVPSPSPRPQALDATQVPSPLPLAQPSTPPVRRLELLPSAESPVCWLEQPESHQR
LAGPGCKAGLSPAEPLLSRAGFSPDSSKADSDAASSGGSDSKKKKRYRPRDYTVNLDGQVAEAGVKPVRL
KERKLTFDPMTRQIKPLTQKEPVRADSPVHMEQQSRTELDKQEAKASLQSPFEQTNWKELSRNEIIQSYL
SRQSSLLSSSGAQTPGAHHFMSEYLKQEESTRQGARQLHVLVPQSPPTDLPGLTREVTQDDLDRIQASQW
PGVNGCQDTQGNWYDWTQCISLDPHGDDGRLNILPYVCLD


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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