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Report for CCDS11958.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11958.1 Public Homo sapiens 18 RAB27B 24 110 108 CCDS HistoryNCBI Gene:5874Re-query CCDS DB by CCDS ID:11958.1Re-query CCDS DB by GeneID:5874See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11958.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000262094.10 ENSP00000262094.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000262094.10Link to Ensembl Protein Viewer:ENSP00000262094.4Re-query CCDS DB by Nucleotide ID:ENST00000262094Re-query CCDS DB by Protein ID:ENSP00000262094
Original member Current member NCBI NM_001375327.1 NP_001362256.1 Accepted alive Link to Nucleotide Sequence:NM_001375327.1Link to Protein Sequence:NP_001362256.1Re-query CCDS DB by Nucleotide ID:NM_001375327Re-query CCDS DB by Protein ID:NP_001362256Link to BLAST:NP_001362256.1
Original member Current member NCBI NM_004163.4 NP_004154.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004163.4Link to Protein Sequence:NP_004154.2Re-query CCDS DB by Nucleotide ID:NM_004163Re-query CCDS DB by Protein ID:NP_004154Link to BLAST:NP_004154.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001362256.1 218 O00194 218 100% 0 0
NP_004154.2 218 O00194 218 100% 0 0

Chromosomal Locations for CCDS 11958.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 54877586 54877738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 54879369 54879454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 54884333 54884436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 54887995 54888118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 54889224 54889413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (657 nt):
ATGACCGATGGAGACTATGATTATCTGATCAAACTCCTGGCCCTCGGGGATTCAGGGGTGGGGAAGACAA
CATTTCTTTATAGATACACAGATAATAAATTCAATCCCAAATTCATCACTACAGTAGGAATAGACTTTCG
GGAAAAACGTGTGGTTTATAATGCACAAGGACCGAATGGATCTTCAGGGAAAGCATTTAAAGTGCATCTT
CAGCTTTGGGACACTGCGGGACAAGAGCGGTTCCGGAGTCTCACCACTGCATTTTTCAGAGACGCCATGG
GCTTCTTATTAATGTTTGACCTCACCAGTCAACAGAGCTTCTTAAATGTCAGAAACTGGATGAGCCAACT
GCAAGCAAATGCTTATTGTGAAAATCCAGATATAGTATTAATTGGCAACAAGGCAGACCTACCAGATCAG
AGGGAAGTCAATGAACGGCAAGCTCGGGAACTGGCTGACAAATATGGCATACCATATTTTGAAACAAGTG
CAGCAACTGGACAGAATGTGGAGAAAGCTGTAGAAACCCTTTTGGACTTAATCATGAAGCGAATGGAACA
GTGTGTGGAGAAGACACAAATCCCTGATACTGTCAATGGTGGAAATTCTGGAAACTTGGATGGGGAAAAG
CCACCAGAGAAGAAATGTATCTGCTAG

Translation (218 aa):
MTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHL
QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQ
REVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRMEQCVEKTQIPDTVNGGNSGNLDGEK
PPEKKCIC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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