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Report for CCDS88733.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88733.1 Public Mus musculus 15 Ttc23l 23 108 98 CCDS HistoryNCBI Gene:75777Re-query CCDS DB by CCDS ID:88733.1Re-query CCDS DB by GeneID:75777See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88733.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000167842.8 ENSMUSP00000155921.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167842.8Link to Ensembl Protein Viewer:ENSMUSP00000155921.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167842Re-query CCDS DB by Protein ID:ENSMUSP00000155921
Current member NCBI NM_001374772.1 NP_001361701.1 Accepted alive Link to Nucleotide Sequence:NM_001374772.1Link to Protein Sequence:NP_001361701.1Re-query CCDS DB by Nucleotide ID:NM_001374772Re-query CCDS DB by Protein ID:NP_001361701Link to BLAST:NP_001361701.1

Chromosomal Locations for CCDS 88733.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 10502116 10502191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10509314 10509396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10515088 10515231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10523573 10523697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10530591 10530699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10533631 10533808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10537536 10537661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10539875 10540031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10547163 10547286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10551399 10551582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10558595 10558650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1362 nt):
ATGGCCCGGGCACCCGCACAGGCCCGAGGTAGCAGAGGTCTGAACTGCCTGGCCCGGTCACAGCAAACTG
GAATCCCAGCACAAGAAACAGATGACTTGTTCTCTACTTGTTACTGTGAGGAGACTGAGGAAGACACTGC
ACATCAGGAAGCGGGGATGACCGTTGACTGTCTGTCTATTCCCAAAAAAAAGTTAGCTCAGTCCCAGAAG
AAAATTAATCAATTCATTAACAGCAAAATGAGCACCAAAGCAAACAAGGAGCTGATTCGGTGTTTCATCC
TCTCTCAGATTGTTTTTGGGAAAGAACATTGGAAATGTGCACAGGCTTTAGCCAACCTGGCGTATGGTTA
CCTGACACTGAGAGGCCTCCCAGCTCAGGCCAAGAAACATGCGGAGAAAGCCAGGAACACACTGCTGACC
TGGAAGCGAAATACAACTTCAGACAAGGATAAGAAGGAAATCCTGGAAACTCTGGTCAGACTCTACTATA
CTCTGGGGGTAGCCTGGCTCCTACAAAACCATGGCAAACAGGCCTACATCCACCTGCAGAAAGCAGAGAG
AAATATGAAGGAACTGAAAGAATTAAACAACGGTAACATTTGTGGAATCCAAGTCTCGGAGAAAGACCTA
ACCATTGCTTTGGGGAGAGCCTCCTTGGCTATGCACAGGATGAACCTAGCCCTGGCGTACTTTGAGAAGG
CAATCTGCGATGTTATCCTTGACAAGGGTCACAACACGTCAGAGCTGATTAGTTTGTACGAAGAAATCGC
TCAGATCGAGCAGCTGAGGAAGAACCACAAACAGGCCATCCAGTACTTGCAGCAGGCCTATTCTATCTGT
GTTTCTTCGTTTTCTGAAGTCAGCCCCCAAACTGCTGAGGCGAGTGCTTTACTAGCGAAAGCGTATGCCA
TGTCTGGAGCATCCGAGTACAGGGATGCGGTTGAGATATATTTTATAAGAAGTATTAGTACATACCAAAC
TCTGGGCTCAGAAGACTATGAAACTCTTACCGCCATTGAAGACTTTTGTACGTGGCTCATCGAAAATGGT
GAAAAACAGGAGGCTTACAGACTTCTAAAGTCTACCCTGAATTCTGGCAACTTTGGGGACTGCGGCAAAA
AGGTAGCTGAAACCTTTTATAACATGGGCAGCATCTGTTTTGCCAAGGGAGAACTCGGAGAAGCAATTGA
GCTACTGAGCAAGTGTCTGATGATTCAGAGTCTTGTCTATGGAAGTGAACACATTAAGAGCATAGAGACT
AAAAGCCTCCTTTCCCTATTGCAGAGGGCAAGTTTATCCAGATGGAAAAAAGTAGCTGCTCCAGGAAAGA
AGAAAAGTGCATGCAGAGACAGAATGGAGTGA

Translation (453 aa):
MARAPAQARGSRGLNCLARSQQTGIPAQETDDLFSTCYCEETEEDTAHQEAGMTVDCLSIPKKKLAQSQK
KINQFINSKMSTKANKELIRCFILSQIVFGKEHWKCAQALANLAYGYLTLRGLPAQAKKHAEKARNTLLT
WKRNTTSDKDKKEILETLVRLYYTLGVAWLLQNHGKQAYIHLQKAERNMKELKELNNGNICGIQVSEKDL
TIALGRASLAMHRMNLALAYFEKAICDVILDKGHNTSELISLYEEIAQIEQLRKNHKQAIQYLQQAYSIC
VSSFSEVSPQTAEASALLAKAYAMSGASEYRDAVEIYFIRSISTYQTLGSEDYETLTAIEDFCTWLIENG
EKQEAYRLLKSTLNSGNFGDCGKKVAETFYNMGSICFAKGELGEAIELLSKCLMIQSLVYGSEHIKSIET
KSLLSLLQRASLSRWKKVAAPGKKKSACRDRME


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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