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Report for CCDS22839.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22839.2 Public Mus musculus 9 Deup1 23 108 98 CCDS HistoryNCBI Gene:234964Re-query CCDS DB by CCDS ID:22839.2Re-query CCDS DB by GeneID:234964See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 22839.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115592.7 ENSMUSP00000111255.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115592.7Link to Ensembl Protein Viewer:ENSMUSP00000111255.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115592Re-query CCDS DB by Protein ID:ENSMUSP00000111255
Original member Current member EBI ENSMUST00000115593.9 ENSMUSP00000111256.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115593.9Link to Ensembl Protein Viewer:ENSMUSP00000111256.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000115593Re-query CCDS DB by Protein ID:ENSMUSP00000111256
Original member NCBI NM_181816.2 NP_861537.2 Updated not alive Link to Nucleotide Sequence:NM_181816.2Link to Protein Sequence:NP_861537.2Re-query CCDS DB by Nucleotide ID:NM_181816Re-query CCDS DB by Protein ID:NP_861537
Current member NCBI NM_181816.3 NP_861537.2 Accepted alive Link to Nucleotide Sequence:NM_181816.3Link to Protein Sequence:NP_861537.2Re-query CCDS DB by Nucleotide ID:NM_181816Re-query CCDS DB by Protein ID:NP_861537Link to BLAST:NP_861537.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_861537.2 507 Q7M6Y5-2 507 100% 0 0

Chromosomal Locations for CCDS 22839.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 15561209 15561385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15563916 15564027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15575148 15575344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15587986 15588091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15592332 15592477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15599696 15599938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15600903 15601016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15607780 15607911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15610571 15610666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15611985 15612156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15626654 15626682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1524 nt):
ATGGAGAACCAAGCCCATACCACAGCAGGAGCTTCTCCTTGTGAAGCTGAGCTTCAGGAACTGATGGAAC
AAATCGACATCATGGTAAGCAACAAGAAGCTAGACTGGGAAAGGAAGATGCGGGCTTTAGAGACACGGTT
AGACCTTCGGGATCAAGAGTTGGCCAACGCACAGACTTGCTTGGACCAGAAAGGCCAGGAGGTGGGGTTG
CTTCGGCAGAAGCTGGACAGCCTAGAGAAATGTAATCTAGTAATGACTCAGAACTATGAGGGGCAGCTAC
AGACCCTAAAAGCTCAATTTTCTAAGCTAACCAGTAACTTCGAAAAGCTGAGATTACACCAAATGAAGCA
AAACCAAATTCACCGAAAGGAGTCCTCCAGCAAAGAAGAACTGCCCTTTGAGCTGAGCAGTCTGAACCAG
AAACTAGAGGAGTTCCGAGCAAAGTCGAGGGAGTGGGACAAGCAGGAGGTCCTCTACCAGACCCACCTGG
TGTCCCTGGATGCTCAGCAGAAGTTGCTCTCTGAAAAGTGCAGCCAGTTTCAGAAACAGGCACAAAATTA
CCAAACTCAGCTAAACGGGAAAAAGCAGTGCGCAGAGGACAGCAGCTCTGAGATCCCTCGCCTGGTGTGT
GAGTCGGATCCTGGCTGTGAAGCCACTCAAAGAGATGAGTTCATTATCGAGAAGTTAAAGTCGGCCGTGA
GTGAAATCGCGCTGAGCAGGAACAAGTTACAAGATGAAAACCAGAAGCTCCTGCAGGAACTGAAGATGTA
CCAGAGGCAGTGCCAGGCCATGGAAGCAGGACTGTCAGAGGTGAAGAGTGAGTTACAGTCGCGAGACGAT
CTCCTGAGGATTATAGAAATGGAAAGACTGCACTTGCATAGAGAACTGCTGAGAATGGGTGAAGTGCAGA
CTGCTCAAGATAACAGGAAAAGAGTTGAGTCATCATATTCCCCTTCTCCTAAAGAAGCAGAAAGGAAAAG
GAAGGAGTTGTTTCCAATGGTCTCAGATCAACCCAATCATGAAAAGGAATTAAGCAAGGCTGTGGACTTA
AGTAACAAGAAGCATTCACAGTGCACATCAATTAACAAGCTTGAATATGAGAACGAAAGACTCCGAAGCG
ATCTCGCCAAGCTCCATGGCAATGGAAAAGCAGCGTGGCCCAATCAGAGCAGCTATGGTGAAGCAGGGGC
ATACGTCTTCCAGAGCCAGCTGAAAACGGAGACCAGTGGAGACAGAATTAGCCAAGACTGCGAGCTGAAC
AGAAGCCCCACACCCTTGTCGCCTTTGCCATTTCAGACCAAAGAAATGGCAAGCCCATTGGTTGGTGACA
ATGAAGTCCTCGCTCTGTCTCCACCAGATATATCCTTCCGGGCTTCCCTAGCTGCACAGCACTTCCTGAT
GGAGGAAGAGAGGCGGGCCAAGGAGCTTGAGAAGCTGCTCAACACACACATCGATGAGCTGCAGAGACAC
ACCGAGTTCACGCTTAACAAATACACCAAACTCAAGCAGAGTAGACACATATGA

Translation (507 aa):
MENQAHTTAGASPCEAELQELMEQIDIMVSNKKLDWERKMRALETRLDLRDQELANAQTCLDQKGQEVGL
LRQKLDSLEKCNLVMTQNYEGQLQTLKAQFSKLTSNFEKLRLHQMKQNQIHRKESSSKEELPFELSSLNQ
KLEEFRAKSREWDKQEVLYQTHLVSLDAQQKLLSEKCSQFQKQAQNYQTQLNGKKQCAEDSSSEIPRLVC
ESDPGCEATQRDEFIIEKLKSAVSEIALSRNKLQDENQKLLQELKMYQRQCQAMEAGLSEVKSELQSRDD
LLRIIEMERLHLHRELLRMGEVQTAQDNRKRVESSYSPSPKEAERKRKELFPMVSDQPNHEKELSKAVDL
SNKKHSQCTSINKLEYENERLRSDLAKLHGNGKAAWPNQSSYGEAGAYVFQSQLKTETSGDRISQDCELN
RSPTPLSPLPFQTKEMASPLVGDNEVLALSPPDISFRASLAAQHFLMEEERRAKELEKLLNTHIDELQRH
TEFTLNKYTKLKQSRHI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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