NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS19925.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19925.1 Public Mus musculus 6 Met 23 108 98 CCDS HistoryNCBI Gene:17295Re-query CCDS DB by CCDS ID:19925.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19925.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080469.11 ENSMUSP00000079324.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080469.11Link to Ensembl Protein Viewer:ENSMUSP00000079324.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000080469Re-query CCDS DB by Protein ID:ENSMUSP00000079324
Original member Current member EBI ENSMUST00000115442.7 ENSMUSP00000111102.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115442.7Link to Ensembl Protein Viewer:ENSMUSP00000111102.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115442Re-query CCDS DB by Protein ID:ENSMUSP00000111102
Original member Current member EBI ENSMUST00000115443.7 ENSMUSP00000111103.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115443.7Link to Ensembl Protein Viewer:ENSMUSP00000111103.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115443Re-query CCDS DB by Protein ID:ENSMUSP00000111103
Original member NCBI NM_008591.2 NP_032617.2 Updated not alive Link to Nucleotide Sequence:NM_008591.2Link to Protein Sequence:NP_032617.2Re-query CCDS DB by Nucleotide ID:NM_008591Re-query CCDS DB by Protein ID:NP_032617
Current member NCBI NM_008591.3 NP_032617.2 Accepted alive Link to Nucleotide Sequence:NM_008591.3Link to Protein Sequence:NP_032617.2Re-query CCDS DB by Nucleotide ID:NM_008591Re-query CCDS DB by Protein ID:NP_032617Link to BLAST:NP_032617.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032617.2 1379 P16056 1379 99.855% 0 2

Chromosomal Locations for CCDS 19925.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 17491241 17492437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17513350 17513541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17526313 17526447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17527076 17527249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17531423 17531583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17533911 17534013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17534122 17534258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17534942 17535103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17535838 17535937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17540438 17540656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17546950 17547096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17548686 17548839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17549032 17549172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17553239 17553469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17555547 17555627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17558709 17558890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17562158 17562267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17563554 17563719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17571372 17571508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17571613 17571823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4140 nt):
ATGAAGGCTCCCACCGTGCTGGCACCTGGCATTCTGGTGCTGCTGTTGTCCTTGGTGCAGAGGAGCCATG
GGGAGTGCAAGGAGGCCCTAGTGAAGTCTGAGATGAACGTGAACATGAAGTATCAGCTCCCCAACTTCAC
GGCAGAAACCCCCATCCAGAATGTCGTCCTACACGGCCATCATATTTATCTCGGAGCCACAAACTACATT
TATGTTTTAAATGACAAAGACCTTCAGAAGGTATCCGAATTCAAGACCGGGCCCGTGTTGGAACACCCAG
ATTGTTTACCTTGTCGGGACTGCAGCAGCAAAGCCAATTCATCAGGAGGGGTTTGGAAAGACAACATCAA
CATGGCTCTGCTTGTTGACACATACTATGATGATCAACTCATTAGCTGTGGCAGTGTCAACAGAGGGACT
TGCCAGCGGCATGTCCTTCCTCCTGACAATTCTGCTGACATCCAGTCTGAGGTCCACTGCATGTTCTCCC
CAGAAGAGGAGTCAGGGCAGTGTCCTGACTGTGTAGTGAGTGCCCTCGGAGCCAAAGTCCTCCTGTCGGA
AAAGGACCGGTTCATCAATTTCTTTGTGGGGAATACGATCAATTCCTCCTATCCTCCTGGTTATTCACTG
CATTCGATATCGGTGAGACGGCTGAAGGAAACCCAAGATGGTTTTAAGTTTTTGACAGACCAGTCCTATA
TTGATGTCTTACCAGAATTCCAAGATTCCTACCCCATAAAGTACATACATGCCTTCGAAAGCAACCATTT
TATTTACTTTCTGACTGTCCAAAAGGAAACTCTAGATGCTCAGACTTTTCATACAAGAATAATCAGGTTC
TGTTCCGTAGACTCTGGGTTGCACTCCTACATGGAAATGCCCCTGGAATGCATCCTGACAGAAAAAAGAA
GGAAGAGATCCACAAGGGAAGAAGTGTTTAATATCCTCCAAGCCGCGTATGTCAGTAAACCAGGGGCCAA
TCTTGCTAAGCAAATAGGAGCTAGCCCTTCTGATGACATTCTCTTCGGGGTGTTTGCACAAAGCAAGCCA
GATTCTGCTGAACCTGTGAATCGATCAGCAGTCTGTGCATTCCCCATCAAATATGTCAATGACTTCTTCA
ACAAGATTGTCAACAAAAACAACGTGAGATGTCTCCAGCATTTTTACGGACCCAACCATGAGCACTGTTT
CAATAGGACCCTGCTGAGAAACTCTTCCGGCTGTGAAGCGCGCAGTGACGAGTATCGGACAGAGTTTACC
ACGGCTTTGCAGCGCGTCGACTTATTCATGGGCCGGCTTAACCAAGTGCTCCTGACATCCATCTCCACCT
TCATCAAAGGTGACCTCACCATTGCTAATCTAGGGACGTCAGAAGGTCGCTTCATGCAGGTGGTGCTCTC
TCGAACAGCACACCTCACTCCTCATGTGAACTTCCTCCTGGACTCCCATCCTGTATCTCCAGAAGTTATT
GTTGAGCATCCATCAAATCAAAATGGCTATACATTGGTTGTCACAGGAAAGAAGATCACCAAGATTCCAT
TGAATGGCCTGGGCTGTGGACATTTCCAATCCTGCAGTCAGTGCCTCTCTGCCCCTTACTTTATACAGTG
TGGCTGGTGCCACAATCAATGTGTGCGTTTTGATGAATGCCCCAGCGGTACATGGACTCAAGAGATCTGT
CTGCCGGCGGTTTATAAGGTGTTCCCCACCAGCGCGCCCCTTGAAGGAGGAACAGTGTTGACCATATGTG
GCTGGGACTTTGGATTCAGGAAGAATAATAAATTTGATTTAAGGAAAACCAAAGTTCTGCTTGGCAACGA
GAGCTGTACCTTGACCTTAAGCGAGAGCACGACAAATACGTTGAAATGCACAGTTGGTCCCGCGATGAGT
GAGCACTTCAATGTGTCTGTAATTATCTCAAACAGTCGAGAGACGACGCAATACAGTGCATTCTCCTATG
TAGATCCTGTAATAACAAGCATTTCTCCGAGGTACGGCCCTCAGGCTGGAGGCACCTTACTCACTCTTAC
TGGGAAATACCTCAACAGTGGCAATTCTAGACACATTTCAATTGGAGGGAAAACATGTACTTTAAAAAGT
GTATCAGATAGTATTCTTGAATGCTACACCCCAGCCCAAACTACCTCTGATGAGTTTCCTGTGAAATTGA
AGATTGACTTGGCTAACCGAGAGACCAGCAGCTTCAGTTACCGGGAAGACCCCGTTGTCTATGAAATCCA
CCCGACCAAATCTTTTATTAGTGGTGGAAGCACAATAACGGGTATTGGGAAGACCCTGAACTCGGTTAGC
CTCCCAAAGCTGGTAATAGATGTGCATGAAGTGGGTGTGAACTACACAGTGGCATGTCAGCATCGCTCAA
ATTCAGAGATCATCTGCTGCACTACTCCTTCACTGAAACAGCTGGGCCTGCAACTCCCCCTGAAGACCAA
AGCCTTCTTCCTGTTAGACGGGATTCTTTCCAAACACTTTGATCTCACTTATGTGCATAATCCTGTGTTT
GAGCCTTTTGAAAAGCCAGTAATGATCTCAATAGGCAATGAAAATGTAGTGGAAATTAAGGGAAACAATA
TTGACCCTGAAGCAGTTAAAGGTGAAGTGTTAAAAGTTGGAAATCAGAGCTGCGAGAGTCTCCACTGGCA
CTCTGGAGCTGTGTTGTGTACAGTCCCCAGTGACCTGCTCAAACTGAACAGCGAGCTAAATATAGAGTGG
AAGCAAGCAGTCTCTTCAACTGTTCTTGGAAAAGTGATCGTTCAACCGGATCAGAATTTTGCAGGATTGA
TCATTGGTGCGGTCTCAATATCAGTAGTAGTTTTGTTATTATCCGGGCTCTTCCTGTGGATGAGAAAGAG
AAAGCATAAAGATCTGGGCAGTGAATTAGTTCGCTATGACGCAAGAGTACACACTCCTCATTTGGATAGG
CTTGTAAGTGCCCGAAGTGTAAGTCCAACTACAGAGATGGTTTCAAATGAGTCTGTAGACTACAGAGCTA
CTTTTCCAGAAGACCAGTTTCCCAACTCCTCTCAGAATGGAGCATGCAGACAAGTGCAATACCCTCTGAC
AGACCTGTCCCCTATCCTGACAAGTGGAGACTCTGATATATCCAGCCCATTACTACAAAATACTGTTCAC
ATTGACCTCAGTGCTCTAAATCCAGAGCTGGTCCAAGCAGTTCAGCACGTAGTGATTGGACCCAGCAGCC
TGATTGTGCATTTCAATGAAGTCATAGGAAGAGGGCATTTTGGCTGTGTCTATCATGGGACTTTGCTGGA
CAATGACGGAAAGAAAATTCACTGTGCTGTGAAATCCTTAAATAGAATCACAGATATAGAAGAGGTCTCC
CAGTTTCTGACTGAGGGAATCATCATGAAAGACTTCAGCCATCCCAATGTTCTCTCACTCTTGGGAATCT
GCCTGAGGAGTGAAGGGTCTCCTCTGGTGGTCCTGCCCTATATGAAGCATGGAGATCTGCGAAATTTCAT
TCGAAACGAGACTCATAATCCAACTGTGAAAGATCTTATAGGATTTGGCCTTCAAGTAGCCAAAGGCATG
AAATATCTTGCCAGCAAAAAGTTTGTCCACAGAGACTTAGCTGCAAGAAACTGCATGTTGGATGAAAAAT
TCACTGTCAAGGTTGCTGATTTCGGTCTTGCCAGAGACATGTACGATAAAGAGTACTATAGTGTCCACAA
CAAGACGGGTGCCAAGCTACCAGTAAAGTGGATGGCTTTAGAGAGTCTGCAAACGCAGAAGTTCACCACC
AAGTCAGATGTGTGGTCCTTTGGTGTGCTCCTCTGGGAGCTCATGACGAGAGGAGCCCCTCCTTATCCCG
ACGTGAACACATTTGATATCACTATCTACCTGTTGCAAGGCAGAAGACTCTTGCAACCAGAATACTGTCC
AGACGCCTTGTACGAAGTGATGCTAAAATGCTGGCACCCCAAAGCGGAAATGCGCCCGTCCTTTTCCGAA
CTGGTCTCCAGGATATCCTCAATCTTCTCCACGTTCATTGGGGAACACTACGTCCACGTGAACGCTACTT
ATGTGAATGTAAAATGTGTTGCTCCATATCCTTCTCTGTTGCCATCCCAAGACAACATTGATGGCGAGGG
GAACACATGA

Translation (1379 aa):
MKAPTVLAPGILVLLLSLVQRSHGECKEALVKSEMNVNMKYQLPNFTAETPIQNVVLHGHHIYLGATNYI
YVLNDKDLQKVSEFKTGPVLEHPDCLPCRDCSSKANSSGGVWKDNINMALLVDTYYDDQLISCGSVNRGT
CQRHVLPPDNSADIQSEVHCMFSPEEESGQCPDCVVSALGAKVLLSEKDRFINFFVGNTINSSYPPGYSL
HSISVRRLKETQDGFKFLTDQSYIDVLPEFQDSYPIKYIHAFESNHFIYFLTVQKETLDAQTFHTRIIRF
CSVDSGLHSYMEMPLECILTEKRRKRSTREEVFNILQAAYVSKPGANLAKQIGASPSDDILFGVFAQSKP
DSAEPVNRSAVCAFPIKYVNDFFNKIVNKNNVRCLQHFYGPNHEHCFNRTLLRNSSGCEARSDEYRTEFT
TALQRVDLFMGRLNQVLLTSISTFIKGDLTIANLGTSEGRFMQVVLSRTAHLTPHVNFLLDSHPVSPEVI
VEHPSNQNGYTLVVTGKKITKIPLNGLGCGHFQSCSQCLSAPYFIQCGWCHNQCVRFDECPSGTWTQEIC
LPAVYKVFPTSAPLEGGTVLTICGWDFGFRKNNKFDLRKTKVLLGNESCTLTLSESTTNTLKCTVGPAMS
EHFNVSVIISNSRETTQYSAFSYVDPVITSISPRYGPQAGGTLLTLTGKYLNSGNSRHISIGGKTCTLKS
VSDSILECYTPAQTTSDEFPVKLKIDLANRETSSFSYREDPVVYEIHPTKSFISGGSTITGIGKTLNSVS
LPKLVIDVHEVGVNYTVACQHRSNSEIICCTTPSLKQLGLQLPLKTKAFFLLDGILSKHFDLTYVHNPVF
EPFEKPVMISIGNENVVEIKGNNIDPEAVKGEVLKVGNQSCESLHWHSGAVLCTVPSDLLKLNSELNIEW
KQAVSSTVLGKVIVQPDQNFAGLIIGAVSISVVVLLLSGLFLWMRKRKHKDLGSELVRYDARVHTPHLDR
LVSARSVSPTTEMVSNESVDYRATFPEDQFPNSSQNGACRQVQYPLTDLSPILTSGDSDISSPLLQNTVH
IDLSALNPELVQAVQHVVIGPSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIEEVS
QFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGM
KYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTT
KSDVWSFGVLLWELMTRGAPPYPDVNTFDITIYLLQGRRLLQPEYCPDALYEVMLKCWHPKAEMRPSFSE
LVSRISSIFSTFIGEHYVHVNATYVNVKCVAPYPSLLPSQDNIDGEGNT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH