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Report for CCDS41574.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41574.1 Public Homo sapiens 10 IKZF5 24 110 108 CCDS HistoryNCBI Gene:64376Re-query CCDS DB by CCDS ID:41574.1Re-query CCDS DB by GeneID:64376See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41574.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368886.10 ENSP00000357881.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368886.10Link to Ensembl Protein Viewer:ENSP00000357881.5Re-query CCDS DB by Nucleotide ID:ENST00000368886Re-query CCDS DB by Protein ID:ENSP00000357881
Original member Current member EBI ENST00000617859.4 ENSP00000478056.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000617859.4Link to Ensembl Protein Viewer:ENSP00000478056.1Re-query CCDS DB by Nucleotide ID:ENST00000617859Re-query CCDS DB by Protein ID:ENSP00000478056
Original member Current member NCBI NM_001271840.1 NP_001258769.1 Accepted alive Link to Nucleotide Sequence:NM_001271840.1Link to Protein Sequence:NP_001258769.1Re-query CCDS DB by Nucleotide ID:NM_001271840Re-query CCDS DB by Protein ID:NP_001258769Link to BLAST:NP_001258769.1
Original member Current member NCBI NM_001372123.1 NP_001359052.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001372123.1Link to Protein Sequence:NP_001359052.1Re-query CCDS DB by Nucleotide ID:NM_001372123Re-query CCDS DB by Protein ID:NP_001359052Link to BLAST:NP_001359052.1
Original member Current member NCBI NM_001372125.1 NP_001359054.1 Accepted alive Link to Nucleotide Sequence:NM_001372125.1Link to Protein Sequence:NP_001359054.1Re-query CCDS DB by Nucleotide ID:NM_001372125Re-query CCDS DB by Protein ID:NP_001359054Link to BLAST:NP_001359054.1
Original member Current member NCBI NM_001372126.1 NP_001359055.1 Accepted alive Link to Nucleotide Sequence:NM_001372126.1Link to Protein Sequence:NP_001359055.1Re-query CCDS DB by Nucleotide ID:NM_001372126Re-query CCDS DB by Protein ID:NP_001359055Link to BLAST:NP_001359055.1
Original member Current member NCBI NM_001372127.1 NP_001359056.1 Accepted alive Link to Nucleotide Sequence:NM_001372127.1Link to Protein Sequence:NP_001359056.1Re-query CCDS DB by Nucleotide ID:NM_001372127Re-query CCDS DB by Protein ID:NP_001359056Link to BLAST:NP_001359056.1
Original member Current member NCBI NM_001372128.1 NP_001359057.1 Accepted alive Link to Nucleotide Sequence:NM_001372128.1Link to Protein Sequence:NP_001359057.1Re-query CCDS DB by Nucleotide ID:NM_001372128Re-query CCDS DB by Protein ID:NP_001359057Link to BLAST:NP_001359057.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258769.1 419 Q9H5V7 419 100% 0 0
NP_001359052.1 419 Q9H5V7 419 100% 0 0
NP_001359054.1 419 Q9H5V7 419 100% 0 0
NP_001359055.1 419 Q9H5V7 419 100% 0 0
NP_001359056.1 419 Q9H5V7 419 100% 0 0
NP_001359057.1 419 Q9H5V7 419 100% 0 0

Chromosomal Locations for CCDS 41574.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 122993780 122994723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 122995994 122996176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 122998493 122998625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1260 nt):
ATGGGTGAAAAAAAACCAGAGCCTTTGGACTTCGTGAAAGATTTTCAGGAATACCTGACTCAGCAGACCC
ATCACGTGAACATGATTTCTGGATCAGTTAGTGGGGACAAAGAAGCAGAGGCTCTTCAGGGAGCTGGAAC
AGATGGTGATCAAAATGGACTTGATCACCCATCTGTTGAAGTTTCCTTGGATGAAAACTCAGGAATGTTA
GTAGACGGGTTTGAAAGGACCTTTGATGGGAAGCTTAAGTGTCGGTACTGCAACTATGCCAGCAAAGGAA
CAGCCCGGCTTATTGAACACATCAGAATCCACACAGGTGAAAAACCTCATCGATGTCATCTTTGTCCATT
TGCATCTGCTTATGAGCGTCATCTGGAAGCCCATATGCGTTCTCATACTGGAGAAAAACCATACAAATGT
GAATTATGTTCCTTCCGCTGCAGTGATCGAAGTAACTTGTCCCATCATCGAAGGCGCAAGCATAAAATGG
TACCAATTAAAGGTACTAGGTCTTCCTTAAGCAGCAAGAAAATGTGGGGGGTTTTACAGAAGAAAACAAG
CAATCTGGGCTATAGCAGAAGAGCACTAATCAACTTAAGTCCACCTTCCATGGTGGTTCAGAAACCAGAC
TACCTTAACGATTTTACCCACGAAATCCCAAATATCCAGACTGACTCCTATGAAAGTATGGCAAAAACCA
CACCAACTGGTGGCCTTCCAAGGGACCCCCAAGAACTCATGGTTGATAACCCTTTGAATCAGCTCTCGAC
TCTAGCAGGGCAGTTGTCCAGTCTGCCACCCGAAAACCAAAACCCTGCATCCCCTGATGTAGTTCCCTGC
CCTGATGAAAAGCCTTTCATGATTCAGCAGCCCTCTACCCAAGCAGTAGTTTCTGCCGTATCAGCAAGTA
TTCCTCAGAGCTCCTCTCCCACAAGCCCAGAACCTCGGCCATCCCATAGTCAAAGGAACTATAGTCCAGT
GGCAGGTCCAAGCAGTGAGCCAAGTGCCCACACGAGCACTCCCAGCATAGGAAACAGCCAGCCAAGCACC
CCAGCCCCAGCCCTGCCGGTCCAGGACCCTCAGCTTCTGCACCACTGCCAGCACTGTGATATGTACTTTG
CAGACAACATCCTTTACACTATTCATATGGGATGTCATGGGTATGAAAATCCTTTTCAGTGTAATATATG
TGGATGCAAATGTAAAAACAAGTATGATTTTGCCTGTCATTTTGCAAGAGGGCAACATAACCAACATTGA

Translation (419 aa):
MGEKKPEPLDFVKDFQEYLTQQTHHVNMISGSVSGDKEAEALQGAGTDGDQNGLDHPSVEVSLDENSGML
VDGFERTFDGKLKCRYCNYASKGTARLIEHIRIHTGEKPHRCHLCPFASAYERHLEAHMRSHTGEKPYKC
ELCSFRCSDRSNLSHHRRRKHKMVPIKGTRSSLSSKKMWGVLQKKTSNLGYSRRALINLSPPSMVVQKPD
YLNDFTHEIPNIQTDSYESMAKTTPTGGLPRDPQELMVDNPLNQLSTLAGQLSSLPPENQNPASPDVVPC
PDEKPFMIQQPSTQAVVSAVSASIPQSSSPTSPEPRPSHSQRNYSPVAGPSSEPSAHTSTPSIGNSQPST
PAPALPVQDPQLLHHCQHCDMYFADNILYTIHMGCHGYENPFQCNICGCKCKNKYDFACHFARGQHNQH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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