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Report for CCDS22424.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22424.1 Public Mus musculus 8 Mcm5 23 108 98 CCDS HistoryNCBI Gene:17218Re-query CCDS DB by CCDS ID:22424.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22424.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000164309.2 ENSMUSP00000126135.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164309.2Link to Ensembl Protein Viewer:ENSMUSP00000126135.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164309Re-query CCDS DB by Protein ID:ENSMUSP00000126135
Original member Current member EBI ENSMUST00000212811.1 ENSMUSP00000148525.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000212811.1Link to Ensembl Protein Viewer:ENSMUSP00000148525.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000212811Re-query CCDS DB by Protein ID:ENSMUSP00000148525
Original member Current member EBI ENSMUST00000212426.1 ENSMUSP00000148648.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000212426.1Link to Ensembl Protein Viewer:ENSMUSP00000148648.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000212426Re-query CCDS DB by Protein ID:ENSMUSP00000148648
Original member Current member NCBI NM_001302540.1 NP_001289469.1 Accepted alive Link to Nucleotide Sequence:NM_001302540.1Link to Protein Sequence:NP_001289469.1Re-query CCDS DB by Nucleotide ID:NM_001302540Re-query CCDS DB by Protein ID:NP_001289469Link to BLAST:NP_001289469.1
Original member Current member NCBI NM_008566.3 NP_032592.2 Accepted alive Link to Nucleotide Sequence:NM_008566.3Link to Protein Sequence:NP_032592.2Re-query CCDS DB by Nucleotide ID:NM_008566Re-query CCDS DB by Protein ID:NP_032592Link to BLAST:NP_032592.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001289469.1 734 P49718 734 100% 0 0
NP_032592.2 734 P49718 734 100% 0 0

Chromosomal Locations for CCDS 22424.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 75109708 75109874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 75110090 75110216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 75110300 75110428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 75112544 75112716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 75114165 75114320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 75115852 75116018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 75117522 75117693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 75119257 75119368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 75120780 75120923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 75121212 75121277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 75121538 75121714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 75122992 75123104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 75123841 75123969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 75124801 75124943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 75126237 75126364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 75127223 75127324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2205 nt):
ATGTCGGGCTTCGACGACCCGGGCATTTTCTACAGCGACAGCTTCGGTGGCGACCCCGGTGCGGAAGAGG
GCCAGGCCCGCAAGTCGCAACTGCAGAGGCGATTCAAGGAGTTCCTGAGACAGTACCGAGTGGGCACCGA
TCGCACGGGCTTCACCTTCAAGTACAGAGATGAACTCAAGCGGCATTACAACCTGGGTGAATACTGGATC
GAGGTGGAGATGGAGGACCTGGCCAGTTTTGACGAGGAACTGGCTGACCACTTGCATAAACAGCCGGCCG
AGCACTTACAGCTGCTTGAGGAAGCTGCCAAGGAGGTGGCAGATGAGGTGACCCGGCCCCGGCCAGCTGG
AGATGAGCTGCTCCAAGACATCCAGGTCATGCTCAAGTCAGATGCCAGCCCGTCGAGCATTCGGATTCTG
AAGTCAGACATGATGTCACACCTGGTGAAGATCCCTGGCATCATCATTTCAGCCTCTGCAGTCCGTGCCA
AGGCTACTCGTATCTCCATTCAGTGCCGCAGCTGCCACAATACCCTCACCAATATCGCCATGCGCCCAGG
CCTAGAGGGCTATGCCCTTCCCAGGAAGTGCAATATGGATCAGGCTGGGCGCCCAAAGTGCCCACTGGAT
CCATACTTCATCATGCCTGACAAGTGCAAGTGTGTGGACTTCCAGACTCTGAAACTGCAGGAGCTGCCTG
ATGCAGTCCCTCATGGTGAGATGCCCAGGCACATGCAGCTTTATTGTGACAGGTACCTGTGTGACAAGGT
TGTTCCTGGGAACAGGGTCACCATCATGGGCATTTATTCCATCAAGAAGTTTGGCTTGAACCCCAGCAAG
GGCCGGGACAGGGTAGGTGTGGGCATCCGGAGCTCGTACATCCGAGTGCTGGGCATCCAGGTGGACACAG
ATGGCTCTGGCCGAAGCTTTGCTGGGTCTGTCAGCCCACAGGAAGAGGAGGAATTTCGTCGCCTGGCTGC
CCTCCCCAACATATATGAGCTCATCTCCAAGAGCATTTCCCCCTCCATCTTTGGGGGCATGGATATGAAG
AAGGCCATTGCCTGCCTGCTTTTTGGGGGTTCCCGGAAGAGGCTCCCAGATGGACTCACTCGCCGAGGTG
ATATCAACTTGCTGATGTTGGGAGACCCTGGTACAGCCAAGTCTCAGCTTCTGAAGTTTGTGGAGAAGTG
CTCTCCCATTGGGGTGTACACATCTGGGAAAGGTAGCAGTGCTGCTGGCTTGACTGCCTCAGTGATACGG
GACCCCTCATCTCGAAACTTCATCATGGAAGGTGGAGCCATGGTTCTGGCCGATGGTGGGGTTGTCTGTA
TTGATGAGTTTGACAAGATGCGGGAAGATGACCGTGTTGCAATCCATGAGGCTATGGAGCAGCAGACCAT
CTCCATTGCTAAAGCTGGGATCACTACCACCTTGAACTCTCGCTGCTCTGTTCTGGCTGCAGCCAACTCA
GTGTTTGGCCGATGGGATGAGACAAAAGGGGAGGACAATATTGACTTCATGCCTACCATCTTGTCCCGAT
TTGATATGATCTTCATCGTCAAAGATGAGCACAATGAGGAGAGGGACATGATGCTAGCCAAACATGTGAT
GACTCTGCATGTGAGTGCACTGACACAGACACAGGCTGTGGAGGGTGAGATCGACCTGGCCAAGATGAAG
AAGTTCATTGCCTACTGCCGAGCGAGGTGTGGACCTCGGCTATCAGCAGAGGCAGCAGAGAAGCTGAAAA
ACCGCTACATCATCATGCGGAGTGGGGCTCGTCAGCATGAGAGGGACAGTGACCGGCGTTCCAGCATCCC
CATCACTGTGCGGCAGCTGGAGGCTATTGTGCGCATTGCTGAGGCCCTCAGTAAGATGAAACTGCAGCCC
TTTGCCACTGAGGCTGATGTAGAGGAGGCATTGAGACTGTTCCAGGTGTCCACACTGGATGCTGCTTTGT
CTGGCAATCTGTCGGGGGTGGAGGGCTTCACTACCCAGGAGGACCAGGAGATGCTGAGCCGCATTGAGAA
GCAACTCAAGCGCCGTTTTGCCATTGGCTCTCAGGTGTCTGAACACAGCATTGTCCAGGACTTCACCAAA
CAGAAATATCCAGAGCACGCTATCCGAAAGGTGCTGCAGCTCATGCTACGCAGGGGTGAGATCCAACACC
GTATGCAGCGCAAGGTGCTCTATCGCCTCAAGTGA

Translation (734 aa):
MSGFDDPGIFYSDSFGGDPGAEEGQARKSQLQRRFKEFLRQYRVGTDRTGFTFKYRDELKRHYNLGEYWI
EVEMEDLASFDEELADHLHKQPAEHLQLLEEAAKEVADEVTRPRPAGDELLQDIQVMLKSDASPSSIRIL
KSDMMSHLVKIPGIIISASAVRAKATRISIQCRSCHNTLTNIAMRPGLEGYALPRKCNMDQAGRPKCPLD
PYFIMPDKCKCVDFQTLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGIYSIKKFGLNPSK
GRDRVGVGIRSSYIRVLGIQVDTDGSGRSFAGSVSPQEEEEFRRLAALPNIYELISKSISPSIFGGMDMK
KAIACLLFGGSRKRLPDGLTRRGDINLLMLGDPGTAKSQLLKFVEKCSPIGVYTSGKGSSAAGLTASVIR
DPSSRNFIMEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANS
VFGRWDETKGEDNIDFMPTILSRFDMIFIVKDEHNEERDMMLAKHVMTLHVSALTQTQAVEGEIDLAKMK
KFIAYCRARCGPRLSAEAAEKLKNRYIIMRSGARQHERDSDRRSSIPITVRQLEAIVRIAEALSKMKLQP
FATEADVEEALRLFQVSTLDAALSGNLSGVEGFTTQEDQEMLSRIEKQLKRRFAIGSQVSEHSIVQDFTK
QKYPEHAIRKVLQLMLRRGEIQHRMQRKVLYRLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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