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Report for CCDS4911.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4911.1 Public Homo sapiens 6 SPATS1 24 110 108 CCDS HistoryNCBI Gene:221409Re-query CCDS DB by CCDS ID:4911.1Re-query CCDS DB by GeneID:221409See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 4911.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000288390.2 ENSP00000424400.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000288390.2Link to Ensembl Protein Viewer:ENSP00000424400.1Re-query CCDS DB by Nucleotide ID:ENST00000288390Re-query CCDS DB by Protein ID:ENSP00000424400
Original member Current member EBI ENST00000323108.12 ENSP00000437552.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000323108.12Link to Ensembl Protein Viewer:ENSP00000437552.1Re-query CCDS DB by Nucleotide ID:ENST00000323108Re-query CCDS DB by Protein ID:ENSP00000437552
Original member Current member EBI ENST00000674044.1 ENSP00000501191.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000674044.1Link to Ensembl Protein Viewer:ENSP00000501191.1Re-query CCDS DB by Nucleotide ID:ENST00000674044Re-query CCDS DB by Protein ID:ENSP00000501191
Original member Current member NCBI NM_001372081.1 NP_001359010.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001372081.1Link to Protein Sequence:NP_001359010.1Re-query CCDS DB by Nucleotide ID:NM_001372081Re-query CCDS DB by Protein ID:NP_001359010Link to BLAST:NP_001359010.1
Original member Current member NCBI NM_145026.4 NP_659463.1 Accepted alive Link to Nucleotide Sequence:NM_145026.4Link to Protein Sequence:NP_659463.1Re-query CCDS DB by Nucleotide ID:NM_145026Re-query CCDS DB by Protein ID:NP_659463Link to BLAST:NP_659463.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001359010.1 300 Q496A3-1 300 100% 0 0
NP_659463.1 300 Q496A3-1 300 100% 0 0

Chromosomal Locations for CCDS 4911.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 44343096 44343234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 44352726 44352873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 44360446 44360570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 44361831 44361992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 44368379 44368499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 44370051 44370113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 44376358 44376473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 44377035 44377063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (903 nt):
ATGAGTCCATCCATGCTCACTGGAAACAGTCCACGGGGCTGCCGTCTCCCCTCCATCTCAAGCACGACCT
GCGGCAGACAGCTGGAGAAGGTTCCAGAAAAAAGGGACTCTGGCATGACCGAGGTGGAGAGGACCTACAG
TGCTAATTGCAGTGATTTTCTGGAATCTAAGGGATGTTTTGCCAACACAACACCCTCTGGCAAAAGTGTC
AGTTCCTCATCTTCTGTGGAAACAGGCCCAAGTGTCAGTGAGCCTCCTGGCCTCCCCAGAGTGTCTGCTT
ACGTAGACACCACTGCTGACTTGGATCGGAAACTCTCCTTCTCACATTCTGATCACTCCTCTGAAATGTC
GTTGCCTGAAGTCCAAAAGGATAAATATCCTGAGGAATTCAGCCTGCTTAAGTTGCAGACGAAAGATGGG
CATCGTCCTGAGTGGACATTTTACCCAAGGTTTAGCAGCAACATCCACACCTACCACGTCGGAAAGCAGT
GCTTCTTTAATGGAGTCTTCCTCGGCAACAAGAGGTCTCTATCAGAGAGGACGGTGGACAAGTGCTTTGG
GAGAAAGAAATACGATATTGATCCCAGGAATGGAATCCCAAAGTTAACTCCAGGCGACAATCCATATATG
TACCCAGAACAGAGTAAAGGCTTCCACAAAGCAGGATCAATGCTCCCACCAGTGAATTTTTCAATAGTGC
CTTATGAAAAGAAATTTGATACATTTATTCCACTTGAGCCTCTTCCACAAATTCCCAACTTGCCTTTCTG
GGTGAAGGAGAAGGCCAACAGTTTGAAAAATGAGATACAAGAGGTTGAGGAGCTTGACAACTGGCAGCCA
GCAGTGCCCTTAATGCACATGCTACACCTTTCTGGTGCTTTGGACTTTCCAAGACAATCCTGA

Translation (300 aa):
MSPSMLTGNSPRGCRLPSISSTTCGRQLEKVPEKRDSGMTEVERTYSANCSDFLESKGCFANTTPSGKSV
SSSSSVETGPSVSEPPGLPRVSAYVDTTADLDRKLSFSHSDHSSEMSLPEVQKDKYPEEFSLLKLQTKDG
HRPEWTFYPRFSSNIHTYHVGKQCFFNGVFLGNKRSLSERTVDKCFGRKKYDIDPRNGIPKLTPGDNPYM
YPEQSKGFHKAGSMLPPVNFSIVPYEKKFDTFIPLEPLPQIPNLPFWVKEKANSLKNEIQEVEELDNWQP
AVPLMHMLHLSGALDFPRQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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