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Report for CCDS20122.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20122.1 Public Mus musculus 6 Gpnmb 23 108 98 CCDS HistoryNCBI Gene:93695Re-query CCDS DB by CCDS ID:20122.1Re-query CCDS DB by GeneID:93695See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20122.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031840.9 ENSMUSP00000031840.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031840.9Link to Ensembl Protein Viewer:ENSMUSP00000031840.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000031840Re-query CCDS DB by Protein ID:ENSMUSP00000031840
Original member Current member NCBI NM_053110.4 NP_444340.3 Accepted alive Link to Nucleotide Sequence:NM_053110.4Link to Protein Sequence:NP_444340.3Re-query CCDS DB by Nucleotide ID:NM_053110Re-query CCDS DB by Protein ID:NP_444340Link to BLAST:NP_444340.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444340.3 574 Q99P91 574 100% 0 0

Chromosomal Locations for CCDS 20122.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 49036723 49036792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49042767 49042919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49043997 49044140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49045305 49045478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49047294 49047452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49047736 49048101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49050410 49050508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49051024 49051126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49051818 49052026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49055621 49055714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49056161 49056314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1725 nt):
ATGGAAAGTCTCTGCGGGGTCCTGGGATTTCTGCTGCTGGCTGCAGGACTGCCTCTCCAGGCTGCCAAGC
GATTTCGTGATGTGCTGGGCCATGAACAGTATCCCGATCACATGAGAGAGCACAACCAATTACGTGGCTG
GTCTTCGGATGAAAATGAATGGGATGAACACCTGTATCCAGTGTGGAGGAGGGGAGACGGCAGGTGGAAG
GACTCCTGGGAAGGAGGCCGTGTGCAGGCAGTCCTGACCAGTGACTCACCGGCTCTGGTGGGTTCCAATA
TCACTTTTGTGGTGAACCTGGTGTTCCCCAGATGCCAGAAGGAAGATGCTAATGGCAATATCGTCTATGA
GAAGAACTGCAGGAATGATTTGGGACTGACATCTGACCTGCATGTCTACAACTGGACTGCAGGGGCAGAT
GATGGTGACTGGGAAGATGGCACCAGCCGAAGCCAGCATCTCAGGTTCCCGGACAGGAGGCCCTTCCCTC
GCCCCCATGGATGGAAGAAATGGAGCTTTGTCTACGTCTTTCACACACTTGGCCAGTATTTCCAAAAACT
GGGTCGGTGTTCAGCACGGGTTTCTATAAACACAGTCAACTTGACAGCTGGCCCTCAGGTCATGGAAGTG
ACTGTCTTTCGAAGATACGGCCGGGCATACATTCCCATCTCGAAGGTGAAAGATGTGTATGTGATAACAG
ATCAGATCCCTGTATTCGTGACCATGTCCCAGAAGAATGACAGGAACTTGTCTGATGAGATCTTCCTCAG
AGACCTCCCCATCGTCTTCGATGTCCTCATTCATGATCCCAGCCACTTCCTCAACGACTCTGCCATTTCC
TACAAGTGGAACTTTGGGGACAACACTGGCCTGTTTGTCTCCAACAATCACACTTTGAATCACACTTATG
TGCTCAATGGAACCTTCAACCTTAACCTCACCGTGCAAACTGCAGTGCCCGGGCCATGCCCTCCCCCTTC
GCCTTCGACTCCGCCTCCACCTTCAACTCCGCCCTCACCTCCGCCCTCACCTCTGCCCACATTATCAACA
CCTAGCCCCTCTTTAATGCCTACTGGTTACAAATCCATGGAGCTGAGTGACATTTCCAATGAAAACTGCC
GAATAAACAGATATGGCTACTTCAGAGCCACCATCACAATTGTAGAGGGGATCCTGGAAGTCAGCATCAT
GCAGATAGCAGATGTCCCCATGCCCACACCGCAGCCTGCCAACTCCCTGATGGACTTCACTGTGACCTGC
AAAGGGGCCACCCCCATGGAAGCCTGTACGATCATCTCCGACCCCACCTGCCAGATCGCCCAGAACCGGG
TCTGCAGCCCTGTGGCTGTGGATGGGCTGTGCCTGCTGTCTGTGAGAAGAGCCTTCAATGGGTCTGGCAC
CTACTGTGTGAATTTCACTCTGGGAGATGATGCAAGCCTGGCCCTCACCAGCACCCTGATCTCTATCCCT
GGCAAAGACCCAGACTCCCCTCTGAGAGCAGTGAATGGTGTCCTGATCTCCATCGGCTGCCTGGCTGTGC
TTGTCACCATGGTTACCATCTTGCTGTACAAAAAACACAAGGCGTACAAGCCAATAGGAAACTGCCCCAG
GAACACGGTCAAGGGCAAGGGCCTGAGTGTTCTCCTCAGTCACGCGAAAGCCCCGTTCTTCCGAGGAGAC
CAGGAGAAGGATCCATTGCTCCAGGACAAGCCAAGGACACTCTAA

Translation (574 aa):
MESLCGVLGFLLLAAGLPLQAAKRFRDVLGHEQYPDHMREHNQLRGWSSDENEWDEHLYPVWRRGDGRWK
DSWEGGRVQAVLTSDSPALVGSNITFVVNLVFPRCQKEDANGNIVYEKNCRNDLGLTSDLHVYNWTAGAD
DGDWEDGTSRSQHLRFPDRRPFPRPHGWKKWSFVYVFHTLGQYFQKLGRCSARVSINTVNLTAGPQVMEV
TVFRRYGRAYIPISKVKDVYVITDQIPVFVTMSQKNDRNLSDEIFLRDLPIVFDVLIHDPSHFLNDSAIS
YKWNFGDNTGLFVSNNHTLNHTYVLNGTFNLNLTVQTAVPGPCPPPSPSTPPPPSTPPSPPPSPLPTLST
PSPSLMPTGYKSMELSDISNENCRINRYGYFRATITIVEGILEVSIMQIADVPMPTPQPANSLMDFTVTC
KGATPMEACTIISDPTCQIAQNRVCSPVAVDGLCLLSVRRAFNGSGTYCVNFTLGDDASLALTSTLISIP
GKDPDSPLRAVNGVLISIGCLAVLVTMVTILLYKKHKAYKPIGNCPRNTVKGKGLSVLLSHAKAPFFRGD
QEKDPLLQDKPRTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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