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Report for CCDS18713.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18713.1 Public Mus musculus 4 Matn1 23 108 98 CCDS HistoryNCBI Gene:17180Re-query CCDS DB by CCDS ID:18713.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18713.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102576.3 ENSMUSP00000099636.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102576.3Link to Ensembl Protein Viewer:ENSMUSP00000099636.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102576Re-query CCDS DB by Protein ID:ENSMUSP00000099636
Original member Current member NCBI NM_010769.2 NP_034899.2 Accepted alive Link to Nucleotide Sequence:NM_010769.2Link to Protein Sequence:NP_034899.2Re-query CCDS DB by Nucleotide ID:NM_010769Re-query CCDS DB by Protein ID:NP_034899Link to BLAST:NP_034899.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034899.2 500 P51942 500 100% 0 0

Chromosomal Locations for CCDS 18713.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 130944424 130944529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130945829 130946175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130949935 130950157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130951289 130951414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130951839 130952255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130952833 130952985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130954336 130954416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130954967 130955016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1503 nt):
ATGAAGGTCACCTCTGGTCCAGCCTTTGCTCTCTGTAGCCTGCTGCTCCTGCTGCTGCTGCTGCTACAGG
TCCCTGATAGCCTCAGTCTTGTCCCCCAGCCCAGAGGGCACCTCTGCCGGACACGACCCACGGACCTGGT
GTTTGTTGTCGATAGCTCTCGAAGTGTGAGACCCGTGGAGTTTGAGAAGGTGAAGGTATTCCTGTCTCAG
GTCATTGAGTCACTGGATGTGGGGCCCAATGCCACGAGGGTGGGCTTGGTCAACTACGCCAGCACTGTGA
AACCAGAGTTCCCGCTCCGGGCCCATGGCTCCAAGGCCTCGCTGCTGCAAGCTGTGCGCCGCATCCAGCC
GCTGTCCACGGGTACCATGACTGGCCTGGCTCTGCAATTCGCCATCACCAAGGCCTTGAGTGATGCTGAG
GGTGGACGCGCCAGATCCCCCGACATCAGCAAGGTTGTCATCGTGGTGACTGATGGGAGGCCCCAGGACA
GCGTGCGGGACGTGTCTGAGCGCGCGAGGGCCAGTGGCATTGAGCTGTTCGCCATCGGCGTGGGCCGCGT
GGACAAGGCTACGCTGCGACAGATCGCTAGCGAGCCGCAGGACGAGCACGTGGATTACGTGGAGAGCTAC
AATGTCATCGAGAAGCTGGCCAAGAAGTTCCAAGAGGCCTTCTGCGTGGTGTCCGACCTGTGTGCCACAG
GGGACCATGATTGTGAGCAGCTGTGCGTTAGTTCTCCTGGCTCCTACACCTGTGCCTGCCATGAGGGCTT
CACCCTGAACAGCGATGGCAAGACCTGCAATGTCTGCCGTGGGGGTGGAAGCGGCTCAGCCACCGACCTG
GTCTTCCTCATCGACGGATCCAAGAGCGTGCGGCCTGAGAACTTTGAGCTGGTGAAGAAGTTCATCAACC
AGATTGTGGACACGTTAGATGTGTCGGACAGGCTAGCCCAGGTGGGGCTGGTGCAGTACTCCAGCTCCAT
TCGCCAGGAGTTCCCACTCGGCCGCTTCCACACCAAGAAGGACATTAAGGCCGCGGTGCGGAACATGTCC
TACATGGAGAAAGGCACCATGACTGGCGCCGCCTTGAAGTATCTCATAGATAATTCTTTCACTGTGTCCA
GCGGGGCAAGGCCTGGAGCCCAGAAGGTGGGCATCGTCTTCACCGATGGCCGGAGCCAGGACTACATTAA
TGACGCTGCCAGGAAGGCCAAGGACCTTGGCTTTAAGATGTTTGCGGTGGGCGTGGGCAATGCTGTGGAG
GAAGAGCTGAGGGAGATCGCTTCCGAGCCCGTGGCAGACCACTACTTTTACACAGCTGACTTCAAGACCA
TCAACCAGATTGGCAAGAAGCTGCAGAAACAAATCTGTGTGGAGGAAGACCCCTGTGCTTGTGAGTCCAT
ACTGAAATTTGAGGCCAAGGTGGAGGGTCTGCTGCAGGCCCTGACCAGGAAGCTGGAAGCTGTGAGCGGG
CGGCTGGCTGTCCTGGAGAACAGAATCATCTAA

Translation (500 aa):
MKVTSGPAFALCSLLLLLLLLLQVPDSLSLVPQPRGHLCRTRPTDLVFVVDSSRSVRPVEFEKVKVFLSQ
VIESLDVGPNATRVGLVNYASTVKPEFPLRAHGSKASLLQAVRRIQPLSTGTMTGLALQFAITKALSDAE
GGRARSPDISKVVIVVTDGRPQDSVRDVSERARASGIELFAIGVGRVDKATLRQIASEPQDEHVDYVESY
NVIEKLAKKFQEAFCVVSDLCATGDHDCEQLCVSSPGSYTCACHEGFTLNSDGKTCNVCRGGGSGSATDL
VFLIDGSKSVRPENFELVKKFINQIVDTLDVSDRLAQVGLVQYSSSIRQEFPLGRFHTKKDIKAAVRNMS
YMEKGTMTGAALKYLIDNSFTVSSGARPGAQKVGIVFTDGRSQDYINDAARKAKDLGFKMFAVGVGNAVE
EELREIASEPVADHYFYTADFKTINQIGKKLQKQICVEEDPCACESILKFEAKVEGLLQALTRKLEAVSG
RLAVLENRII


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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