NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS28394.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28394.1 Public Mus musculus 17 Mas1 23 108 98 CCDS HistoryNCBI Gene:17171Re-query CCDS DB by CCDS ID:28394.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28394.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000089015.9 ENSMUSP00000086409.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089015.9Link to Ensembl Protein Viewer:ENSMUSP00000086409.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000089015Re-query CCDS DB by Protein ID:ENSMUSP00000086409
Original member Current member EBI ENSMUST00000161747.7 ENSMUSP00000123902.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161747.7Link to Ensembl Protein Viewer:ENSMUSP00000123902.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161747Re-query CCDS DB by Protein ID:ENSMUSP00000123902
Original member Current member EBI ENSMUST00000162333.7 ENSMUSP00000125108.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162333.7Link to Ensembl Protein Viewer:ENSMUSP00000125108.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162333Re-query CCDS DB by Protein ID:ENSMUSP00000125108
Original member Current member EBI ENSMUST00000167152.7 ENSMUSP00000131341.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167152.7Link to Ensembl Protein Viewer:ENSMUSP00000131341.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167152Re-query CCDS DB by Protein ID:ENSMUSP00000131341
Original member Current member EBI ENSMUST00000165020.7 ENSMUSP00000132300.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165020.7Link to Ensembl Protein Viewer:ENSMUSP00000132300.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165020Re-query CCDS DB by Protein ID:ENSMUSP00000132300
Original member Current member EBI ENSMUST00000233607.1 ENSMUSP00000156871.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000233607.1Link to Ensembl Protein Viewer:ENSMUSP00000156871.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000233607Re-query CCDS DB by Protein ID:ENSMUSP00000156871
Original member Current member NCBI NM_008552.5 NP_032578.2 Accepted alive Link to Nucleotide Sequence:NM_008552.5Link to Protein Sequence:NP_032578.2Re-query CCDS DB by Nucleotide ID:NM_008552Re-query CCDS DB by Protein ID:NP_032578Link to BLAST:NP_032578.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032578.2 324 P30554 324 100% 0 0

Chromosomal Locations for CCDS 28394.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 12841560 12842534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (975 nt):
ATGGACCAGTCAAATATGACATCCCTTGCTGAAGAGAAAGCCATGAATACCTCCAGCAGAAATGCCTCCC
TGGGGAGCTCACACCCACCCATTCCCATAGTGCACTGGGTCATCATGAGCATCTCCCCTCTGGGCTTTGT
GGAGAATGGGATCCTCCTCTGGTTCCTCTGCTTCCGGATGAGGAGAAATCCCTTCACGGTCTACATTACC
CACTTGTCCATTGCTGATATCTCTCTTCTGTTCTGTATTTTTATCCTGTCCATTGACTATGCTTTAGACT
ATGAACTCTCTTCTGGCCATCACTACACAATCGTGACATTATCGGTGACTTTTCTATTTGGCTACAACAC
GGGCCTCTATCTGCTGACAGCCATCAGTGTGGAGAGGTGCCTATCGGTCCTCTACCCCATATGGTACAGA
TGCCACCGCCCCAAGCACCAGTCAGCATTCGTCTGTGCCCTTCTGTGGGCACTTTCGTGCTTGGTGACCA
CCATGGAGTATGTCATGTGTATTGACAGCGGAGAAGAGAGTCATTCTCGGAGTGACTGCCGGGCGGTCAT
CATCTTCATAGCCATCCTCAGCTTCTTGGTCTTCACTCCGCTCATGTTAGTGTCCAGCACCATCTTGGTG
GTGAAGATACGGAAGAACACGTGGGCCTCCCATTCTTCGAAGCTGTACATTGTCATCATGGTCACCATTA
TCATATTCCTCATCTTTGCCATGCCCATGCGGGTCCTCTACTTGCTGTACTACGAGTACTGGTCAGCCTT
TGGGAACCTGCATAACATCTCCTTGCTTTTCTCCACCATCAACAGCAGCGCCAACCCTTTCATCTACTTT
TTTGTGGGCAGCAGTAAGAAGAAGCGCTTCAGGGAGTCCTTAAAAGTCGTCCTGACCAGGGCTTTCAAAG
ATGAAATGCAACCCAGGCGCCAGGAGGGCAACGGCAACACTGTATCCATTGAGACTGTGGTCTGA

Translation (324 aa):
MDQSNMTSLAEEKAMNTSSRNASLGSSHPPIPIVHWVIMSISPLGFVENGILLWFLCFRMRRNPFTVYIT
HLSIADISLLFCIFILSIDYALDYELSSGHHYTIVTLSVTFLFGYNTGLYLLTAISVERCLSVLYPIWYR
CHRPKHQSAFVCALLWALSCLVTTMEYVMCIDSGEESHSRSDCRAVIIFIAILSFLVFTPLMLVSSTILV
VKIRKNTWASHSSKLYIVIMVTIIIFLIFAMPMRVLYLLYYEYWSAFGNLHNISLLFSTINSSANPFIYF
FVGSSKKKRFRESLKVVLTRAFKDEMQPRRQEGNGNTVSIETVV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH