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Report for CCDS12125.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12125.1 Public Homo sapiens 19 SHD 24 110 108 CCDS HistoryNCBI Gene:56961Re-query CCDS DB by CCDS ID:12125.1Re-query CCDS DB by GeneID:56961See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12125.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000543264.7 ENSP00000446058.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000543264.7Link to Ensembl Protein Viewer:ENSP00000446058.1Re-query CCDS DB by Nucleotide ID:ENST00000543264Re-query CCDS DB by Protein ID:ENSP00000446058
Original member Current member NCBI NM_001372011.1 NP_001358940.1 Accepted alive Link to Nucleotide Sequence:NM_001372011.1Link to Protein Sequence:NP_001358940.1Re-query CCDS DB by Nucleotide ID:NM_001372011Re-query CCDS DB by Protein ID:NP_001358940Link to BLAST:NP_001358940.1
Original member Current member NCBI NM_020209.4 NP_064594.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020209.4Link to Protein Sequence:NP_064594.3Re-query CCDS DB by Nucleotide ID:NM_020209Re-query CCDS DB by Protein ID:NP_064594Link to BLAST:NP_064594.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001358940.1 340 Q96IW2 340 100% 0 0
NP_064594.3 340 Q96IW2 340 100% 0 0

Chromosomal Locations for CCDS 12125.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 4280064 4280360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4282870 4282975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4283054 4283242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4284781 4284904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4288243 4288362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4290447 4290633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1023 nt):
ATGGCCAAGTGGCTACGGGACTACCTGAGCTTTGGGGGTCGGAGGCCCCCTCCGCAGCCGCCCACCCCGG
ACTACACCGAGAGCGACATCCTGAGGGCCTACCGCGCGCAGAAGAACCTGGACTTCGAGGACCCCTATGA
GGACGCGGAGAGCCGCTTGGAGCCGGACCCCGCGGGCCCTGGGGACTCCAAGAACCCCGGAGATGCCAAG
TATGGTTCTCCCAAGCACCGGCTCATCAAGGTGGAGGCTGCGGATATGGCCAGAGCCAAGGCCCTTCTGG
GCGGCCCCGGGGAGGAGCTGGAAGCCGACACTGAGTATTTAGACCCCTTTGATGCTCAGCCTCATCCTGC
ACCCCCGGATGATGGGTACATGGAGCCCTACGATGCCCAATGGGTCATGAGTGAACTTCCCGGCAGAGGG
GTGCAGCTCTATGACACCCCTTATGAGGAACAGGACCCAGAGACAGCAGATGGACCCCCTTCTGGGCAGA
AGCCTCGGCAGAGCCGGATGCCCCAGGAAGATGAACGGCCAGCAGATGAGTATGATCAGCCCTGGGAGTG
GAAGAAAGACCACATCTCCAGGGCGTTTGCAGTGCAGTTTGACAGTCCAGAGTGGGAGAGGACTCCAGGC
TCAGCCAAGGAGCTCCGGAGACCTCCGCCCAGAAGCCCCCAGCCTGCGGAGCGTGTGGACCCAGCCCTGC
CCCTGGAGAAACAGCCGTGGTTTCATGGCCCCCTGAACAGGGCGGATGCAGAGAGCCTCCTGTCCCTCTG
CAAGGAAGGCAGCTACCTAGTGCGGCTCAGTGAGACCAACCCCCAGGACTGCTCCTTGTCTCTCAGGAGC
AGCCAGGGCTTCCTGCATCTGAAGTTCGCGCGGACCCGTGAGAACCAGGTGGTGCTGGGCCAACACAGCG
GGCCCTTCCCCAGCGTGCCCGAGCTCGTCCTCCACTACAGTTCACGCCCACTGCCGGTGCAGGGTGCCGA
GCATCTGGCTCTGCTGTACCCCGTGGTCACGCAGACCCCCTGA

Translation (340 aa):
MAKWLRDYLSFGGRRPPPQPPTPDYTESDILRAYRAQKNLDFEDPYEDAESRLEPDPAGPGDSKNPGDAK
YGSPKHRLIKVEAADMARAKALLGGPGEELEADTEYLDPFDAQPHPAPPDDGYMEPYDAQWVMSELPGRG
VQLYDTPYEEQDPETADGPPSGQKPRQSRMPQEDERPADEYDQPWEWKKDHISRAFAVQFDSPEWERTPG
SAKELRRPPPRSPQPAERVDPALPLEKQPWFHGPLNRADAESLLSLCKEGSYLVRLSETNPQDCSLSLRS
SQGFLHLKFARTRENQVVLGQHSGPFPSVPELVLHYSSRPLPVQGAEHLALLYPVVTQTP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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