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Report for CCDS26314.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26314.1 Public Mus musculus 13 Vmn1r195 23 108 98 CCDS HistoryNCBI Gene:171257Re-query CCDS DB by CCDS ID:26314.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26314.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091736.4 ENSMUSP00000089330.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091736.4Link to Ensembl Protein Viewer:ENSMUSP00000089330.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000091736Re-query CCDS DB by Protein ID:ENSMUSP00000089330
Original member Current member EBI ENSMUST00000228711.1 ENSMUSP00000154274.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228711.1Link to Ensembl Protein Viewer:ENSMUSP00000154274.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228711Re-query CCDS DB by Protein ID:ENSMUSP00000154274
Original member Current member NCBI NM_134223.2 NP_598984.2 Accepted alive Link to Nucleotide Sequence:NM_134223.2Link to Protein Sequence:NP_598984.2Re-query CCDS DB by Nucleotide ID:NM_134223Re-query CCDS DB by Protein ID:NP_598984Link to BLAST:NP_598984.2

Chromosomal Locations for CCDS 26314.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 22278362 22279312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (951 nt):
ATGATTTGGAGTGAGCTCATCCAACGAGTAATCTTCCTTTCTCTTATTGGACTTGGAATCTTAGGAAACA
TCCTTATATTTGTGAGACATGTGCTTACATTTACCATGGGTTCTGAGAAAAAACCTATAGACCTTATTAT
CTTCACTCATCTGGCTTTTTCAAATGTAATCATTATTGGTACTTCGGGGATCAGATATGTAGCCACAAAA
CTTCATTTCAAAAATGGTCTGGGCATTGCAGGCTGTAAAACTCTGGTTTATTTGGGAAGGGTGGCCCGTC
GCCTCTCCATCTGCACCACCTGTCTCCTCAGCATGGTCCAGGTTGTCACCATCAGTCCTAGAACCTCCTT
TTTGAGAAAGTTCAGACCACAAACAATATGGCAAGTTCTTCCCTCTCTCCTCCTCCTTTGTATCTTTAAT
GTTCTCATAAGCTCCAATTTGCTTCATCATATCACAGTGGGCAGCAGTTTGAATAGATCTAGAGCTGGTG
TGTATTATGAGTATTGCTATATGCTGCCATCTAGGTACACAGTTAAGTGGCTTTTCCTCCGTCTCATGAC
TCTTCGTGATGTCATCTTTCAGTGTCTCATGGGCTGGAGCAGTGGGTACATGGCGCTCCGTCTGTATAAA
CATCACAAGTGTGTCCTTTACCTTCACACCTCCAGGCTTGCAAATAATGCCAGCCCAGAAATCCGAGCTA
CGTGGAGTGTTCTCATTCTTATGACCTGTTTCCTCCTCTATTACTTTGGGGATTACATTTTATCCTTCTA
CATTGGTTCTGTCTTGACTCTTGACTCCATAATACTAAATATTAGAATATTTCTAGTAATTGGCTATGCT
GCTCTAAGCCCCTTTGTCCTGCTAATAAAGGATTTTCATCTGATTAGTTGCTGGCACACTCATTGGCAAG
TTGAGGAAACAACTTTCTATAACAACCCCTCTAGTAACTAA

Translation (316 aa):
MIWSELIQRVIFLSLIGLGILGNILIFVRHVLTFTMGSEKKPIDLIIFTHLAFSNVIIIGTSGIRYVATK
LHFKNGLGIAGCKTLVYLGRVARRLSICTTCLLSMVQVVTISPRTSFLRKFRPQTIWQVLPSLLLLCIFN
VLISSNLLHHITVGSSLNRSRAGVYYEYCYMLPSRYTVKWLFLRLMTLRDVIFQCLMGWSSGYMALRLYK
HHKCVLYLHTSRLANNASPEIRATWSVLILMTCFLLYYFGDYILSFYIGSVLTLDSIILNIRIFLVIGYA
ALSPFVLLIKDFHLISCWHTHWQVEETTFYNNPSSN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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