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Report for CCDS26322.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26322.1 Public Mus musculus 13 Vmn1r205 23 108 98 CCDS HistoryNCBI Gene:171251Re-query CCDS DB by CCDS ID:26322.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26322.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000185475.2 ENSMUSP00000139977.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000185475.2Link to Ensembl Protein Viewer:ENSMUSP00000139977.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000185475Re-query CCDS DB by Protein ID:ENSMUSP00000139977
Original member Current member NCBI NM_134217.1 NP_598978.1 Accepted alive Link to Nucleotide Sequence:NM_134217.1Link to Protein Sequence:NP_598978.1Re-query CCDS DB by Nucleotide ID:NM_134217Re-query CCDS DB by Protein ID:NP_598978Link to BLAST:NP_598978.1

Chromosomal Locations for CCDS 26322.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 22591980 22592930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (951 nt):
ATGCAAGTTTTTCTACCTAGGAAGGAAGAAATGGTTTTGAATTATATTAATAAAATAATTTTTCCCTTTA
TGACTATGTTTGGCACTCTGGGGAACATGTCTGTTTCTGTGAATTATATGTTCAGTTGCTGGGGAAGCCC
TGAGAAGAAACCCATATACCTTATTCTTATCCACTTGGCTTTTACAAACATCCTAATACTTCTTGCAAAA
GGATTGCCCAAGACTATTTTAGTTTTTGGTTTGAGAAACTTCCTAGATGATATAGGGTGTAAGATCATTG
TTTATCTGGAGAGGGTGGCCCGTGGCCTCTCCATCTGCACCAGCAGTCTCCTCACTGTGGTCCAGGCCAT
CATTATCAGTCCCAGAGCATCTGGGTGGAGGAGGCTCAAGCCAAAGTCTGCATGGCACATTCTTCCATTC
TTCTCATTCTTTTGGATACTCAATGGTTTAATCAGTACGAACCTAATCCATTTCATTAGAAGTACAAGTC
TGAATATATCACAACATATAAATGATGAGAATTATTGCTATTTTACACTACAAAATCAGGATATAAAATG
GATTTTTTTAATCCTCATGGTCCTGAGAGATACAGTGTTTCAGGGTGCTATGGGAGGCGCCAGTGGCTAC
ATGGTATTTCTTCTCCACAAGCATCACCAGCATGTCCTCTATCTTCTCAACTCCAATCTCCTCTACAGAA
CTCCCCCTGAGCTGAGAGCTGCTCAAAGTGTCCTCCTTCTGATGCTCTGTTTTGTTTTCTTCTACTGGAC
AGATTGTGCCTTTTCTATAATTATAAACATCTCTTCAAGGGACACTACCCTGATGATAAATACTCGAGAA
TTTCTGACCCTTGGTTATGCAACTTTTAGTCCCTTTGTTCTGATTCACAGGGATGGGCTTCTGAATAAAT
TTTGGCATGCTCAGTGGGAGAAATTGAGAAAATATCTCTGA

Translation (316 aa):
MQVFLPRKEEMVLNYINKIIFPFMTMFGTLGNMSVSVNYMFSCWGSPEKKPIYLILIHLAFTNILILLAK
GLPKTILVFGLRNFLDDIGCKIIVYLERVARGLSICTSSLLTVVQAIIISPRASGWRRLKPKSAWHILPF
FSFFWILNGLISTNLIHFIRSTSLNISQHINDENYCYFTLQNQDIKWIFLILMVLRDTVFQGAMGGASGY
MVFLLHKHHQHVLYLLNSNLLYRTPPELRAAQSVLLLMLCFVFFYWTDCAFSIIINISSRDTTLMINTRE
FLTLGYATFSPFVLIHRDGLLNKFWHAQWEKLRKYL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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