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Report for CCDS20801.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20801.1 Public Mus musculus 7 Vmn1r74 23 108 98 CCDS HistoryNCBI Gene:171240Re-query CCDS DB by CCDS ID:20801.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20801.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050416.1 ENSMUSP00000055148.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050416.1Link to Ensembl Protein Viewer:ENSMUSP00000055148.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000050416Re-query CCDS DB by Protein ID:ENSMUSP00000055148
Original member Current member EBI ENSMUST00000228471.1 ENSMUSP00000154746.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228471.1Link to Ensembl Protein Viewer:ENSMUSP00000154746.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228471Re-query CCDS DB by Protein ID:ENSMUSP00000154746
Original member Current member NCBI NM_134206.1 NP_598967.1 Accepted alive Link to Nucleotide Sequence:NM_134206.1Link to Protein Sequence:NP_598967.1Re-query CCDS DB by Nucleotide ID:NM_134206Re-query CCDS DB by Protein ID:NP_598967Link to BLAST:NP_598967.1

Chromosomal Locations for CCDS 20801.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 11846775 11847689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (915 nt):
ATGGCTTTTGAAAATATTGTACTTGGAATTTTCCTCTTCTTCCAGATTGCCATGGGAATAATTGGCAATT
CTTTAATACTAGTTTATTATGTCAGTTTGAAACTCACTGGAAAATATTTAATGCCCAAAGACCTGATCAT
AGAGCACTTGACTTTTGCCAATTGCCTGTTCATCATCTCAAAAGGTATTCCACAGACACTGTCAAATTAT
GGATATAAAAATTTCCTAGATGACTTTGGATGTAAATTGATAATATATGCTTATCGAATAACAAGAGGGA
TGTCCCTTTATGCTATGTGTCTATTGTGTTGCTTCCAAGCAATCACAATCAGCCCCAACTATTCCAGATG
GATGATGTTTAAACACAGAGCCACCAAGTACCTTGGTCCCTCCTGCTCACTTTGCTGGCTTGTACAACTA
TTTCTAAACATATTGGCTGCAGCAAGAGTGTCAGGTCCCCATTACAACAAAAATACTATTAACAGGATGC
ATCTTGGGTACTGTTCATCGTTTGCTTCAGGCAACTTTGCAACTGCGCTGTATTTATTCTTGCTGTGCTT
CTGTGATGGACTGTGTCTGGGTCTCATGGCCTATTCAAGTGTCTCCATGGTGAGTATTCTCTACAGACAT
AAGAAACAAGTCAAACATATCCACAGTGCTCAGCACTTTTTAAAAGTCTCTCCTGAAGACAGAGCCACAC
AGACTATCCTCATCCTGGTGTGCACATTTGTCCTATCTTACTTATACTCCTCTATTTTGATAATCTTTAC
AACCTACTCCAAATATCCAATGCTATGGGTGGTAAGTATATTTACATTTCTAGAAATATGTTTTCCTATA
TTTTGCCCCTTTGTTCTCATCAGCAGCATGAAGTCTAGGTCCAGCATACTTTTGCCTTGCTTTGGTAAGA
GATAG

Translation (304 aa):
MAFENIVLGIFLFFQIAMGIIGNSLILVYYVSLKLTGKYLMPKDLIIEHLTFANCLFIISKGIPQTLSNY
GYKNFLDDFGCKLIIYAYRITRGMSLYAMCLLCCFQAITISPNYSRWMMFKHRATKYLGPSCSLCWLVQL
FLNILAAARVSGPHYNKNTINRMHLGYCSSFASGNFATALYLFLLCFCDGLCLGLMAYSSVSMVSILYRH
KKQVKHIHSAQHFLKVSPEDRATQTILILVCTFVLSYLYSSILIIFTTYSKYPMLWVVSIFTFLEICFPI
FCPFVLISSMKSRSSILLPCFGKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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