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Report for CCDS51797.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51797.1 Public Mus musculus 6 Vmn1r30 23 108 98 CCDS HistoryNCBI Gene:171195Re-query CCDS DB by CCDS ID:51797.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 51797.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078890.4 ENSMUSP00000087336.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078890.4Link to Ensembl Protein Viewer:ENSMUSP00000087336.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000078890Re-query CCDS DB by Protein ID:ENSMUSP00000087336
Original member Current member EBI ENSMUST00000228577.1 ENSMUSP00000153898.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228577.1Link to Ensembl Protein Viewer:ENSMUSP00000153898.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228577Re-query CCDS DB by Protein ID:ENSMUSP00000153898
Original member Current member EBI ENSMUST00000226334.1 ENSMUSP00000153952.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226334.1Link to Ensembl Protein Viewer:ENSMUSP00000153952.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226334Re-query CCDS DB by Protein ID:ENSMUSP00000153952
Original member Current member EBI ENSMUST00000228635.1 ENSMUSP00000154098.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228635.1Link to Ensembl Protein Viewer:ENSMUSP00000154098.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228635Re-query CCDS DB by Protein ID:ENSMUSP00000154098
Original member Current member EBI ENSMUST00000227466.1 ENSMUSP00000154766.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227466.1Link to Ensembl Protein Viewer:ENSMUSP00000154766.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227466Re-query CCDS DB by Protein ID:ENSMUSP00000154766
Original member Current member NCBI NM_134177.1 NP_598938.1 Accepted alive Link to Nucleotide Sequence:NM_134177.1Link to Protein Sequence:NP_598938.1Re-query CCDS DB by Nucleotide ID:NM_134177Re-query CCDS DB by Protein ID:NP_598938Link to BLAST:NP_598938.1

Chromosomal Locations for CCDS 51797.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 58434937 58435845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (909 nt):
ATGTCCTCATTAAAGAATATCCTTTATTTCCAAGCTGGACTTGGAATTCTAGCCAATACTTTTCTCCTTT
GTTTCTATACTTTCACAATCCTAGGTCATAGATCAAAGCCCATGGATCCGACCTCCTGCCAACTGACATT
TGCTCATATATTATTTTTGCTAGCGGGAGGGGATAATTGGCTTGCAGTCATACTTGAGTCACTGAACATT
GAGAATGACTTCAAGTGTAAGGCAATTTTTTATACAAGTAGGGTCATGAGAGGGTTCTCTATCTGCATCA
CCTGCCTCCTGAGTGTGTTCCAGGCTGTCACAATCAGTCCCCATACCTCACTGTTGGCAAAATTTAAGCA
TAAACTAAATACATACATCTTCTATGCTGTTTTATATATTTGGTTTTTTAATTTCTTGGCCAATAGTCAC
ATGATATTCTATGTTGGTGGTTTTAACAATGTGAGTGAAACCAACCAGATGAGAGTCACTCAATCCTGTT
CACTATTTCCCATGAACTACGTCATCAGTGGATTGATTTTTACAGTGACAACTTTCAGAGATGTATTTCT
TGTAGGAGTCATGCTGATCACAAGTGCATATATAGTGATTATCTTGTTCAGACACCAGAGGCACTGCAGG
CATCTTCATAGCATCAGGCACCTGAGAGTGTCCCCTGAGAAAAGGGCCACCCAGACCATCTTACTACTTG
TGGTTTTCTTTGTGGTCATGTACTGGGTGGACTTCATCATCTCATCCACCTCACTCTTGTTATGGATGTA
TGACCCAGTCATCCTGACTGTTCAGAAGCTTGTAGTGACTGCCTATCCCACAATTACTCCTTTGGTACAA
ATCAGTTCTGATAAGAGAGTAATCAACGTGTTGAAAAACTCACAATCAAAGTGCCAACAGATTTTCTAA

Translation (302 aa):
MSSLKNILYFQAGLGILANTFLLCFYTFTILGHRSKPMDPTSCQLTFAHILFLLAGGDNWLAVILESLNI
ENDFKCKAIFYTSRVMRGFSICITCLLSVFQAVTISPHTSLLAKFKHKLNTYIFYAVLYIWFFNFLANSH
MIFYVGGFNNVSETNQMRVTQSCSLFPMNYVISGLIFTVTTFRDVFLVGVMLITSAYIVIILFRHQRHCR
HLHSIRHLRVSPEKRATQTILLLVVFFVVMYWVDFIISSTSLLLWMYDPVILTVQKLVVTAYPTITPLVQ
ISSDKRVINVLKNSQSKCQQIF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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