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Report for CCDS20190.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20190.1 Public Mus musculus 6 Vmn1r26 23 108 98 CCDS HistoryNCBI Gene:171190Re-query CCDS DB by CCDS ID:20190.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20190.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049694.3 ENSMUSP00000052301.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049694.3Link to Ensembl Protein Viewer:ENSMUSP00000052301.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000049694Re-query CCDS DB by Protein ID:ENSMUSP00000052301
Original member Current member EBI ENSMUST00000228951.1 ENSMUSP00000154463.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228951.1Link to Ensembl Protein Viewer:ENSMUSP00000154463.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228951Re-query CCDS DB by Protein ID:ENSMUSP00000154463
Original member Current member EBI ENSMUST00000228040.1 ENSMUSP00000154514.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228040.1Link to Ensembl Protein Viewer:ENSMUSP00000154514.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228040Re-query CCDS DB by Protein ID:ENSMUSP00000154514
Original member Current member EBI ENSMUST00000228070.1 ENSMUSP00000154594.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228070.1Link to Ensembl Protein Viewer:ENSMUSP00000154594.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228070Re-query CCDS DB by Protein ID:ENSMUSP00000154594
Original member Current member NCBI NM_134172.1 NP_598933.1 Accepted alive Link to Nucleotide Sequence:NM_134172.1Link to Protein Sequence:NP_598933.1Re-query CCDS DB by Nucleotide ID:NM_134172Re-query CCDS DB by Protein ID:NP_598933Link to BLAST:NP_598933.1

Chromosomal Locations for CCDS 20190.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 58008183 58009202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1020 nt):
ATGTCTTCAATTAAGAATGTCCTTTATTTCCAATCTGGACTTGGAGTTCTAGCCAATATGTTTCTACTGA
TTTTCTATATTTTCATAGTCTTAGGTCACAGACCTAAGCCCATAGACCTGATCTCCTGTCAACTAAACTT
TGTTCACATAATGATGTTCCTTACTGCAGGGGATATTTGGCTTACAGACTTATTTGCGTCACTGAACATT
GAGAATAACTTCAAATGTAAGGCAACTTTTTACATAAACAGGGTGATGAGAGGCCTCTCTATCTGCATCA
CCTGCCTCCTGAGTGTGTTCCAGGCCGTCACTATGAGTCCCAGTACCTCTTTCTTGGCAAAATTTAAACA
TACACTAAAAAAGTACATCATATACATTTTCTTCTATTTTTGGCTGTTCAATTTGTCTTTCAGCAGTAAC
CAGCTCTTCTCTGCTGGTGCTTATACCAATGTGAGTGACACCAACCAAATGAAGATCAGCAAATACTGCT
CATACTTTCCCACAAACAAAATTATCAGGGGATTGATTTTAACAGTGACAACTTTAAGAGATGTGTTTCT
TGTAGGAGTCATGGTGACAACAAGTGCATACATGGTGCTTTTATTGTTCAGACATCAGAAGCAATGCAAG
CATCTTCATAGCATCAATTACTGGAGAGCATCTCCTGAGAAAAAGGCCACACAGACCATCCTGGTGCTGG
TGGTTTTCTTTGTGGTAATGTACTGGGTAGACCTCATCATCTCATCTACCTCAGTCCTGTTGTGGAGGTA
TGACACAGTCATACTGACTGTACAGAAGTTTGTGATGAATGTCTATCCCACAATTACTCCTTTGGTACAA
ATCAGTTCTGATAACAGAATACTCAAATGCCACCAAGCTTTTTTTAAAGGGGCAATTTTTGTCTTCTTTA
AAAAAGATATTTATTCCTCCGGTCTGTGCCAGCATCATGCCACTTTGGATCTGAATTCAGTGGACAGTCC
CACTGTCTCTGGAGGAATCTCCACCATACAGGTCCACTAA

Translation (339 aa):
MSSIKNVLYFQSGLGVLANMFLLIFYIFIVLGHRPKPIDLISCQLNFVHIMMFLTAGDIWLTDLFASLNI
ENNFKCKATFYINRVMRGLSICITCLLSVFQAVTMSPSTSFLAKFKHTLKKYIIYIFFYFWLFNLSFSSN
QLFSAGAYTNVSDTNQMKISKYCSYFPTNKIIRGLILTVTTLRDVFLVGVMVTTSAYMVLLLFRHQKQCK
HLHSINYWRASPEKKATQTILVLVVFFVVMYWVDLIISSTSVLLWRYDTVILTVQKFVMNVYPTITPLVQ
ISSDNRILKCHQAFFKGAIFVFFKKDIYSSGLCQHHATLDLNSVDSPTVSGGISTIQVH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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