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Report for CCDS20213.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20213.1 Public Mus musculus 6 Vmn1r35 23 108 98 CCDS HistoryNCBI Gene:171185Re-query CCDS DB by CCDS ID:20213.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20213.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071414.1 ENSMUSP00000071362.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071414.1Link to Ensembl Protein Viewer:ENSMUSP00000071362.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000071414Re-query CCDS DB by Protein ID:ENSMUSP00000071362
Original member Current member EBI ENSMUST00000227354.1 ENSMUSP00000153959.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227354.1Link to Ensembl Protein Viewer:ENSMUSP00000153959.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227354Re-query CCDS DB by Protein ID:ENSMUSP00000153959
Original member Current member EBI ENSMUST00000227749.1 ENSMUSP00000154707.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227749.1Link to Ensembl Protein Viewer:ENSMUSP00000154707.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227749Re-query CCDS DB by Protein ID:ENSMUSP00000154707
Original member Current member NCBI NM_134167.1 NP_598928.1 Accepted alive Link to Nucleotide Sequence:NM_134167.1Link to Protein Sequence:NP_598928.1Re-query CCDS DB by Nucleotide ID:NM_134167Re-query CCDS DB by Protein ID:NP_598928Link to BLAST:NP_598928.1

Chromosomal Locations for CCDS 20213.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 66678794 66679684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (891 nt):
ATGTTTTCATTAAATAATATCCTTTATTTCCAAGCAGGGCTTGGAGCTATAGCCAATATAGTTCTTCTTT
TTTTCTACACTATAATAATCCTGTGTCACAGATCTAAGCCCATGGACATGATCTCCTGTCAATTGACCTT
CATTCACATAATGTTGTTTCTCACTGGAGGGCATGCTTGGCTTACAGATTTCTTTGTGTCATTGAACATT
GGCAATGACTTCATATGTAAGGCAACTGCTTACATAAACAGGGTGATGAGAGGCCTCTCTATCTGCATCA
CCTGCCTCCTGAGTGTGTTCCAGGCTGTGACGATCAGTCCCAATACCTCTTTGTTGGCAAAATTTAAACA
TAAACTAAAAAAATACATGATCTCTTCCTTCTTCTATTTTTGGTCTTTCAATTTGTCATTCAGCATTAAC
AGGATCATCTATACTGGTGCTTATACCAACGTGAGTGAGACCAGCCAGTTGAAGGTGATTAAATACTGCT
CACTCTTCCCCATGAACTACATCATCAGGGGACTGATTTTAACCATGACAACCTTAAGAGATGTGTTTCT
TGTAGGAGTCATGCTGACTACGAGCACATACATGGTGATTATCTTGTTCAGACATCAGAGGCAATGCAAG
CATCTTCATAGCATCAACCACCTGAGAGCCTCCCCTGAGAAAAGGGCCACTCATACCATCTTGCTGCTGG
TGGTTTTCTTTGTGGTCATGTACTGGGTGGACTTCATCATCTCATCCACCTCAGTCCTGTTATGGATGTA
TGACCCAGTCATCCTGACTGTTCAGAAGTTTGTGATGAATGCCTATCCTACAATTACTCCATTGGTACAA
ATCAGTTCTGATAAGCGAATAAGCATGATGCTAAAAAATATGCAAAAATAA

Translation (296 aa):
MFSLNNILYFQAGLGAIANIVLLFFYTIIILCHRSKPMDMISCQLTFIHIMLFLTGGHAWLTDFFVSLNI
GNDFICKATAYINRVMRGLSICITCLLSVFQAVTISPNTSLLAKFKHKLKKYMISSFFYFWSFNLSFSIN
RIIYTGAYTNVSETSQLKVIKYCSLFPMNYIIRGLILTMTTLRDVFLVGVMLTTSTYMVIILFRHQRQCK
HLHSINHLRASPEKRATHTILLLVVFFVVMYWVDFIISSTSVLLWMYDPVILTVQKFVMNAYPTITPLVQ
ISSDKRISMMLKNMQK


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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