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Report for CCDS8132.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8132.1 Public Homo sapiens 11 YIF1A 24 110 108 CCDS HistoryNCBI Gene:10897Re-query CCDS DB by CCDS ID:8132.1Re-query CCDS DB by GeneID:10897See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8132.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000376901.9 ENSP00000366098.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000376901.9Link to Ensembl Protein Viewer:ENSP00000366098.4Re-query CCDS DB by Nucleotide ID:ENST00000376901Re-query CCDS DB by Protein ID:ENSP00000366098
Original member Current member NCBI NM_020470.3 NP_065203.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020470.3Link to Protein Sequence:NP_065203.2Re-query CCDS DB by Nucleotide ID:NM_020470Re-query CCDS DB by Protein ID:NP_065203Link to BLAST:NP_065203.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065203.2 293 O95070 293 100% 0 0

Chromosomal Locations for CCDS 8132.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 66284637 66284783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66284873 66284966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66285381 66285536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66285701 66285758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66287598 66287676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66287812 66287916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66288081 66288292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66288955 66288985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (882 nt):
ATGGCTTATCACTCGGGCTACGGAGCCCACGGCTCCAAGCACAGGGCCCGGGCAGCCCCGGATCCCCCTC
CCCTCTTCGATGACACAAGCGGTGGTTATTCCAGCCAGCCCGGGGGATACCCAGCCACAGGAGCAGACGT
GGCCTTCAGTGTCAACCACTTGCTTGGGGACCCAATGGCCAATGTGGCTATGGCCTATGGCAGCTCCATC
GCATCCCATGGGAAGGACATGGTGCACAAGGAGCTGCACCGTTTTGTGTCTGTGAGCAAACTCAAGTATT
TTTTTGCTGTGGACACAGCCTACGTGGCCAAGAAGCTAGGGCTGCTGGTCTTCCCCTACACACACCAGAA
CTGGGAAGTGCAGTACAGTCGTGATGCTCCTCTGCCCCCCCGGCAAGACCTCAACGCCCCTGACCTCTAT
ATCCCCACGATGGCCTTCATTACTTACGTGCTCCTGGCTGGGATGGCACTGGGCATTCAGAAAAGGTTCT
CCCCGGAGGTGCTGGGCCTGTGTGCAAGCACAGCGCTGGTGTGGGTGGTGATGGAGGTGCTGGCCCTGCT
CCTGGGCCTCTACCTGGCCACCGTGCGCAGTGACCTGAGCACCTTTCACCTGCTGGCCTACAGTGGCTAC
AAATACGTGGGAATGATCCTCAGTGTGCTCACGGGGCTGCTGTTCGGCAGCGATGGCTACTACGTGGCGC
TGGCCTGGACCTCATCGGCGCTCATGTACTTCATTGTGCGCTCTTTGCGGACAGCAGCCCTGGGCCCCGA
CAGCATGGGGGGCCCCGTCCCCCGGCAGCGTCTCCAGCTCTACCTGACTCTGGGAGCTGCAGCCTTCCAG
CCCCTCATCATATACTGGCTGACTTTCCACCTGGTCCGGTGA

Translation (293 aa):
MAYHSGYGAHGSKHRARAAPDPPPLFDDTSGGYSSQPGGYPATGADVAFSVNHLLGDPMANVAMAYGSSI
ASHGKDMVHKELHRFVSVSKLKYFFAVDTAYVAKKLGLLVFPYTHQNWEVQYSRDAPLPPRQDLNAPDLY
IPTMAFITYVLLAGMALGIQKRFSPEVLGLCASTALVWVVMEVLALLLGLYLATVRSDLSTFHLLAYSGY
KYVGMILSVLTGLLFGSDGYYVALAWTSSALMYFIVRSLRTAALGPDSMGGPVPRQRLQLYLTLGAAAFQ
PLIIYWLTFHLVR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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