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Report for CCDS26457.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26457.1 Public Mus musculus 13 Ly86 23 108 98 CCDS HistoryNCBI Gene:17084Re-query CCDS DB by CCDS ID:26457.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26457.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021860.6 ENSMUSP00000021860.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021860.6Link to Ensembl Protein Viewer:ENSMUSP00000021860.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000021860Re-query CCDS DB by Protein ID:ENSMUSP00000021860
Original member NCBI NM_010745.2 NP_034875.1 Updated not alive Link to Nucleotide Sequence:NM_010745.2Link to Protein Sequence:NP_034875.1Re-query CCDS DB by Nucleotide ID:NM_010745Re-query CCDS DB by Protein ID:NP_034875
Current member NCBI NM_010745.3 NP_034875.1 Accepted alive Link to Nucleotide Sequence:NM_010745.3Link to Protein Sequence:NP_034875.1Re-query CCDS DB by Nucleotide ID:NM_010745Re-query CCDS DB by Protein ID:NP_034875Link to BLAST:NP_034875.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034875.1 162 O88188 162 100% 0 0

Chromosomal Locations for CCDS 26457.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 37345439 37345574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 37374963 37375049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 37376888 37377016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 37415497 37415549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 37418539 37418622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (489 nt):
ATGAATGGTGTCGCAGCTGCCCTCCTTGTGTGGATTCTGACTTCTCCGAGCAGCAGTGACCATGGCAGCG
AAAATGGTTGGCCCAAGCACACGGCCTGCAACAGTGGGGGCTTGGAAGTAGTCTACCAGAGCTGTGATCC
CTTACAGGATTTTGGCCTTTCCATTGACCAGTGTTCCAAGCAGATCCAATCAAATCTCAACATTAGATTT
GGCATCATTCTGAGACAGGATATCAGAAAGCTGTTTCTGGACATAACTCTGATGGCAAAAGGCTCTTCTA
TTCTGAACTACTCCTATCCCCTTTGTGAGGAGGACCAGCCCAAGTTCTCATTCTGTGGAAGAAGAAAAGG
AGAACAGATATACTATGCCGGCCCTGTCAATAACCCTGGACTTGATGTTCCACAGGGAGAATATCAGCTC
TTGCTGGAACTGTACAATGAAAACCGTGCTACTGTGGCTTGTGCCAATGCCACTGTCACCTCCTCCTGA

Translation (162 aa):
MNGVAAALLVWILTSPSSSDHGSENGWPKHTACNSGGLEVVYQSCDPLQDFGLSIDQCSKQIQSNLNIRF
GIILRQDIRKLFLDITLMAKGSSILNYSYPLCEEDQPKFSFCGRRKGEQIYYAGPVNNPGLDVPQGEYQL
LLELYNENRATVACANATVTSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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