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Report for CCDS23823.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23823.1 Public Mus musculus 10 Rtn4ip1 23 108 98 CCDS HistoryNCBI Gene:170728Re-query CCDS DB by CCDS ID:23823.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23823.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054418.11 ENSMUSP00000060940.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054418.11Link to Ensembl Protein Viewer:ENSMUSP00000060940.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000054418Re-query CCDS DB by Protein ID:ENSMUSP00000060940
Original member Current member NCBI NM_130892.5 NP_570962.2 Accepted alive Link to Nucleotide Sequence:NM_130892.5Link to Protein Sequence:NP_570962.2Re-query CCDS DB by Nucleotide ID:NM_130892Re-query CCDS DB by Protein ID:NP_570962Link to BLAST:NP_570962.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_570962.2 396 Q924D0 396 99.7475% 0 1

Chromosomal Locations for CCDS 23823.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 43902263 43902536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 43907759 43907910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 43909907 43909975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 43910793 43910917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 43921387 43921435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 43928323 43928459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 43932363 43932546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 43935999 43936091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 43946421 43946528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1191 nt):
ATGGGCGTTTTGAAGACCTGTGTACTTAGAAGAAGTGCTTGTGCCGCCGCCTGCTTCTGGAGAAGGACAG
TTATCCCAAAGCCACCATTTAGAGGCATTAGTACTACGTCTGCGAGGAGCACTGTCATGCCCGCTTGGGT
GATAGATAAATATGGAAAGAATGAAGTCCTTCGATTCACCCAGAACATGATGTTACCTATCATACACTAT
CCAAATGAAGTCATTATCAAAGTCCACGCTGCCAGTGTAAATCCTATAGATGTTAATATGAGAAGTGGTT
ATGGAGCCACAGCCCTAAATATGAAGCGTGATCCCCTGCATATGAAAACCAAAGGAGAAGAGTTTCCTCT
GACTCTGGGTCGGGATGTCTCTGGTGTGGTGATGGAGTGTGGGCTTGATGTGAAGTATTTCCAGCCTGGA
GATGAGGTCTGGGCTGCAGTTCCTCCTTGGAAGCAAGGCACTCTCTCAGAATTTGTTGTGGTCAGTGGGA
ATGAGGTTTCACACAAGCCCAAATCGCTTACTCATACTCAAGCTGCCTCTTTGCCATATGTGGCTCTCAC
GGCCTGGTCTGCCATAAACAAGGTTGGCGGCCTGAGTGACAGGAACTGCAAGGGGAAGCGTGCCTTAATC
TTGGGTGCGTCAGGTGGAGTTGGTACTTTTGCGATACAGGTAATGAAAGCATGGGGGGCTCATGTGACAG
CCGTTTGCTCGAAAGATGCCAGTGAACTTGTGCGGAAGCTTGGAGCAGATGAGGTCATTGATTACACGTT
GGGAAGTGTGGAAGAGCAATTGAAATCTCTAAAACTGTTTGACTTTATCCTTGATAACGTTGGTGGATCT
ACTGAAACATGGGCTCTAAATTTTCTCAAGAAGTGGTCAGGAGCTACCTATGTGACTCTGGTGACTCCTT
TCCTCCTGAACATGGACCGACTGGGTGTTGCTGATGGCATGTTGCAGACAGGAGTCACCGTGGGTACAAA
GGCATTGAAGCATCTCTGGCAAGGAGTCCATTACAGATGGGCCTTCTTCATGGCCAGTGGTCCATATCTA
GATGAAATTGCAGAACTGGTGGATGCAGGAAAGATCCGGCCAGTTATTGAGCGGACATTCCCTTTCTCTG
AAGTCCCAGAAGCCTTCCTGAAGGTGGAGAGAGGCCACGCCCGAGGAAAGACTGTGGTTAATGTAGTTTA
A

Translation (396 aa):
MGVLKTCVLRRSACAAACFWRRTVIPKPPFRGISTTSARSTVMPAWVIDKYGKNEVLRFTQNMMLPIIHY
PNEVIIKVHAASVNPIDVNMRSGYGATALNMKRDPLHMKTKGEEFPLTLGRDVSGVVMECGLDVKYFQPG
DEVWAAVPPWKQGTLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLSDRNCKGKRALI
LGASGGVGTFAIQVMKAWGAHVTAVCSKDASELVRKLGADEVIDYTLGSVEEQLKSLKLFDFILDNVGGS
TETWALNFLKKWSGATYVTLVTPFLLNMDRLGVADGMLQTGVTVGTKALKHLWQGVHYRWAFFMASGPYL
DEIAELVDAGKIRPVIERTFPFSEVPEAFLKVERGHARGKTVVNVV


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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