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Report for CCDS16510.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16510.1 Public Mus musculus 2 Bbox1 23 108 98 CCDS HistoryNCBI Gene:170442Re-query CCDS DB by CCDS ID:16510.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16510.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046233.8 ENSMUSP00000046302.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046233.8Link to Ensembl Protein Viewer:ENSMUSP00000046302.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000046233Re-query CCDS DB by Protein ID:ENSMUSP00000046302
Original member NCBI NM_130452.1 NP_569719.1 Updated not alive Link to Nucleotide Sequence:NM_130452.1Link to Protein Sequence:NP_569719.1Re-query CCDS DB by Nucleotide ID:NM_130452Re-query CCDS DB by Protein ID:NP_569719
Current member NCBI NM_130452.2 NP_569719.1 Accepted alive Link to Nucleotide Sequence:NM_130452.2Link to Protein Sequence:NP_569719.1Re-query CCDS DB by Nucleotide ID:NM_130452Re-query CCDS DB by Protein ID:NP_569719Link to BLAST:NP_569719.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_569719.1 387 Q924Y0 387 100% 0 0

Chromosomal Locations for CCDS 16510.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 110265454 110265614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110268228 110268394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110270015 110270211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110275559 110275664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110292410 110292608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110303742 110303856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110305414 110305632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1164 nt):
ATGCACTGTGCCATCCTAAAGGCAGAAGCAGTGGATGGGGCTCATTTGATGCAGATCTTTTGGCACGATG
GGGCAGAGTCCCTCTACCCAGCAGTATGGCTGAGAGACAACTGTCAGTGTTCAGACTGCTACCTACATTC
TGCAAAAGCTCGGAAACTTCTCCTGGAAGCTCTTGATGTAAACATTAGAATCGATGATTTGACATTTGAC
CGGAAAAAGGTTTATATCACATGGCCCAATGACCATTACAGTGAATTCGAAGCTAACTGGCTGAAGAAAA
GATGCTTTTCTCAACAGGCCAGAGCAAGGCTCCAAGGAGAATTGTTTTTACCAGAATGTCAGTACTGGGG
CTCAGAACTCCAGCTGCCAACTCTGAATTTTGAAGATGTGTTAAATGATGATGACCATGCATACAAATGG
CTTTCCAGTCTCAAGAAAGTAGGCATTGTGAGACTCACCGGAGCAGCTGACAAACGTGGTGAGATCATAA
AACTTGGGAAAAGAATTGGCTTCCTGTACCTCACATTTTATGGACACACTTGGCAAGTGCAGGACAAGAT
TGATGCCAACAATGTGGCTTATACAACTGGGAAGCTCAGCTTCCACACTGACTACCCAGCCCTCCACCAT
CCACCTGGGGTTCAGCTTCTGCATTGTATCAAGCAAACAGTCACAGGAGGTGACTCTGAAATTGTGGATG
GGTTTAACGTGTGCCAAAAGCTCAAGGAGAAGAACCCTCAGGCTTTCCATATTCTCTCCTCGACCTTTGT
GGATTTTACAGACATTGGAGTGGATTACTGTGATTTCTCTGTGCAATCTAAACACAAGATTATAGAGTTG
GATGATAAAGGCCAAGTGGTTCGCGTCAACTTCAACAATGCAACCAGAGATACAGTCTTTGATGTCCCCA
TCGAAAGAGTTCAGCCTTTCTACGCTGCTCTGAAAGAGTTTGTTGACCTCATGAACAGCAAAGAATACAA
GTATACCTTCAAGATGAATCCAGGTGATGTGATTACCTTCGACAACTGGCGCTTGCTTCATGGACGTCGT
AGCTATGAGGCGGGAACTGAGATATCCCGCCATCTGGAAGGAGCGTATGCTGACTGGGATGTAGTGATGT
CAAGGCTTCGTATTCTGAGACAGAGAGTCACGAATGGGAACTGA

Translation (387 aa):
MHCAILKAEAVDGAHLMQIFWHDGAESLYPAVWLRDNCQCSDCYLHSAKARKLLLEALDVNIRIDDLTFD
RKKVYITWPNDHYSEFEANWLKKRCFSQQARARLQGELFLPECQYWGSELQLPTLNFEDVLNDDDHAYKW
LSSLKKVGIVRLTGAADKRGEIIKLGKRIGFLYLTFYGHTWQVQDKIDANNVAYTTGKLSFHTDYPALHH
PPGVQLLHCIKQTVTGGDSEIVDGFNVCQKLKEKNPQAFHILSSTFVDFTDIGVDYCDFSVQSKHKIIEL
DDKGQVVRVNFNNATRDTVFDVPIERVQPFYAALKEFVDLMNSKEYKYTFKMNPGDVITFDNWRLLHGRR
SYEAGTEISRHLEGAYADWDVVMSRLRILRQRVTNGN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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