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Report for CCDS53217.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53217.1 Public Mus musculus X Gm15091 23 108 98 CCDS HistoryNCBI Gene:382244Re-query CCDS DB by CCDS ID:53217.1Re-query CCDS DB by GeneID:382244See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53217.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112740.1 ENSMUSP00000108360.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112740.1Link to Ensembl Protein Viewer:ENSMUSP00000108360.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112740Re-query CCDS DB by Protein ID:ENSMUSP00000108360
Original member Current member NCBI NM_001122735.1 NP_001116207.1 Accepted alive Link to Nucleotide Sequence:NM_001122735.1Link to Protein Sequence:NP_001116207.1Re-query CCDS DB by Nucleotide ID:NM_001122735Re-query CCDS DB by Protein ID:NP_001116207Link to BLAST:NP_001116207.1

Chromosomal Locations for CCDS 53217.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 149941731 149941746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 149961872 149961997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 149962718 149962797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 149966457 149967415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 149976571 149976652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 149977459 149977508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 149984346 149984382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1350 nt):
ATGGCGAACCATGAAGACGAAATTAGACAGCTGAGATATCTAGAAGCTGCTAATTCTGAAAAAGAATACA
ATGAGGAGAATGACATACAGTCAGAAAGCTCCAGAGGGCAGGCATTTTTCCGTGGACATCCGCGAGGGAG
AGGACACAGACGTGACAGTAGGGGAAGAAATGGCCATTTTTTCAGACAAAGATTTTCAGCAAATCATCCT
CTACTTCATCTGACAAGACAAGTCAACCTAGAAAGTCTAACAAGGAGGAATGGAAACCAATCAGAAGAGA
GACAGCTACAACAAGAAAGAATCCAATTGTTCTTCAGGAGTTTACATGGCCTCTCCCAATCTCATGACCA
CCACATTGGCAGATCTCATGGCCACGATTCCAGAAGATCACGTAATCGATTCAGGAGAGCTCCTGTTCAC
TCAGAGAGATCTCATGTCTACTCAGGTAGAACTAATAACTATACAGATAGACCACACCATGACCTCTCAG
ATAGACCACACAATCAACTCTCAGTGAGACCACATCCTGACCTCTCAGGTAGACCACTTCATGACTACTC
AGGTAGACCACATCAAAACCATGCAGTTAGGCTTCAACATGGCCACTCAGATAGATATCATCTTACCCAT
ACAGAGAGAGTTCTTCCTAGCCACTCAGGGATAGCTCATCCTGGCCACACAGAGAGAGATAATCAAGTCC
AAAGAGGGAGAGCTCATGATAACCAATCAGGGTTAGCTCATCACAACCATGATGGCAGATCTCATCATGA
CCACTCAGGGAGAGCTTATCATGGCCATGCAAGGAGAGCTCATAACAACCAGTCATGGAGATCTGATAAC
AACCAGTCATGGAGAGATCTTAACCAGTCATGGAGAGGTCGGAACAACCAGTCAAAAAGAGGTCATGACA
ACCAGTCACAGAGAGGTCATGACAACCAGTCACGTAGAGGTCATGACAACCAGTCACAGAGAGGTCATGA
CAACCAGTCACAGAGAGGTCATAATGATCAGTCATGGAGAGCTCATAACATCCGGTCACGGAGAGATCGT
TATCACACCTCATTGAGATCTAGTAGCATCCAGTCATGGATGCTTCATGAAAGAGAAAGATACCATGGTC
CAAGAGGAAGAAATGGACCAAGGGATGCATCACCACCAGGATCTGAGCCAGAAATTGTCAGATCGTCTGC
AATAAGAGAAAGGACTGACTATTTATGGGTACAGGAACATCGAAGAAATGAGACAGTTGAACTGAATGTA
GGGCTAGAAGACGGCTACAGCAGTGCTGAAGAGAGTGATGAAAGTTTTGACAGACTAACCTGTCGCTCCA
TGCTAGATACACTATACTAA

Translation (449 aa):
MANHEDEIRQLRYLEAANSEKEYNEENDIQSESSRGQAFFRGHPRGRGHRRDSRGRNGHFFRQRFSANHP
LLHLTRQVNLESLTRRNGNQSEERQLQQERIQLFFRSLHGLSQSHDHHIGRSHGHDSRRSRNRFRRAPVH
SERSHVYSGRTNNYTDRPHHDLSDRPHNQLSVRPHPDLSGRPLHDYSGRPHQNHAVRLQHGHSDRYHLTH
TERVLPSHSGIAHPGHTERDNQVQRGRAHDNQSGLAHHNHDGRSHHDHSGRAYHGHARRAHNNQSWRSDN
NQSWRDLNQSWRGRNNQSKRGHDNQSQRGHDNQSRRGHDNQSQRGHDNQSQRGHNDQSWRAHNIRSRRDR
YHTSLRSSSIQSWMLHERERYHGPRGRNGPRDASPPGSEPEIVRSSAIRERTDYLWVQEHRRNETVELNV
GLEDGYSSAEESDESFDRLTCRSMLDTLY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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