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Report for CCDS51631.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51631.1 Public Mus musculus 5 Suds3 23 108 98 CCDS HistoryNCBI Gene:71954Re-query CCDS DB by CCDS ID:51631.1Re-query CCDS DB by GeneID:71954See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51631.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000166397.2 ENSMUSP00000130535.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166397.2Link to Ensembl Protein Viewer:ENSMUSP00000130535.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166397Re-query CCDS DB by Protein ID:ENSMUSP00000130535
Original member Current member NCBI NM_001122666.2 NP_001116138.1 Accepted alive Link to Nucleotide Sequence:NM_001122666.2Link to Protein Sequence:NP_001116138.1Re-query CCDS DB by Nucleotide ID:NM_001122666Re-query CCDS DB by Protein ID:NP_001116138Link to BLAST:NP_001116138.1

Chromosomal Locations for CCDS 51631.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 117092832 117092856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117092946 117093031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117094910 117094994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117098271 117098376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117099301 117099322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117099477 117099538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117100600 117100695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117105155 117105311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117106646 117106665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117108348 117108419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117109758 117109813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117112810 117112879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117115672 117115813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (999 nt):
ATGAGCGCCGCGGGGCTGCTGGCTCCGGCGCCGGCTCCGGCTGCAGCGCCGGCCGCCCCGGAGTACTACC
CG
GAGGACGAGGAGGAGTTGGAGAGCGCCGAGGACGACGAGCGCAGCTGCCGGGGCCGAGAGTCCGACGA
A
GACACCGAGGATGCCAGCGAGACTGACCTGGCGAAGCACGATGAGGAAGACTACGTGGAGATGAAGGAA
CA
G
ATGTATCAGGACAAACTGGCATCTTTGAAGAGGCAGCTGCAACAGCTTCAGGAAGGTACGCTCCAGG
AA
TATCAGAAACGGATGAAGAAACTGGACCAGCAGTACCGAGAGCGGATCCGGAATGCAGAGCTCTTCCT
C
CAGCTGGAAACGGAACAGGTGGAGAGGAATTACATTAAAGAGAAGAAGGCGGCCGTGAAGGAGTTTGAA
GAC
AAGAAGGTGGAGCTGAAGGAGAACCTGATTGCCGAGCTGGAGGAGAAGAAGAAGATGATCGAGAACG
AG
AAACTCACCATGGAGCTGACTGGAGATTCTATGGAAGTGAAACCCATCATGACCAGAAAATTGCGGAG
G
CGACCAAACGATCCTGTCCCCATTCCAGACAAGAGGAGAAAACCGGCTCCTGCTCAGCTGAACTACTTG
CTA
ACAGACGAGCAGATCATGGAGGACCTGAGGACGCTGAACAAGCTTAAGTCACCCAAGAGACCAGCTT
CC
CCATCCTCTCCTGAACACTTGCCTGCCACACCTGCAGAGTCTCCAGCCCAGAGGTTTGAGGCTCGGAT
A
GAAGATGGCAAACTGTACTATGATAAGAGATGGTACCACAAGAGCCAGGCCATCTACCTGGAATCTAAG
GAC
AACCAGAAGCTGAGCTGTGTGATCAGCTCAGTGGGAGCCAACGAGATCTGGGTGAGGAAGACCAGCG
AC
AGCACCAAGATGCGGATCTACGTGGGCCAGCTGCAGCGTGGGCTCTTCGTGATCCGCCGGCGAAAATT
C
TTAACTTACCGGGACTAG


Translation (332 aa):
MSAAGLLAPAPAPAAAPAAPEYYPEDEEELESAEDDERSCRGRESDEDTEDASETDLAKHDEEDYVEMKE
Q
MYQDKLASLKRQLQQLQEGTLQEYQKRMKKLDQQYRERIRNAELFLQLETEQVERNYIKEKKAAVKEFE
D
KKVELKENLIAELEEKKKMIENEKLTMELTG
DSMEVKPIMTRKLRRRPNDPVPIPDKRRKPAPAQLNYL
L
TDEQIMEDLRTLNK
LKSPKRPASPSSPEHLPATPAESPAQRFEARIEDGKLYYDKRWYHKSQAIYLESK
D
NQKLSCVISSVGANE
IWVRKTSDSTKMRIYVGQLQRGLFVIRRRKFLTYRD



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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