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Report for CCDS18794.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18794.1 Public Mus musculus 4 Fuca1 23 108 98 CCDS HistoryNCBI Gene:71665Re-query CCDS DB by CCDS ID:18794.1Re-query CCDS DB by GeneID:71665See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18794.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030434.4 ENSMUSP00000030434.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030434.4Link to Ensembl Protein Viewer:ENSMUSP00000030434.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000030434Re-query CCDS DB by Protein ID:ENSMUSP00000030434
Original member Current member NCBI NM_024243.4 NP_077205.3 Accepted alive Link to Nucleotide Sequence:NM_024243.4Link to Protein Sequence:NP_077205.3Re-query CCDS DB by Nucleotide ID:NM_024243Re-query CCDS DB by Protein ID:NP_077205Link to BLAST:NP_077205.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077205.3 452 Q99LJ1 452 100% 0 0

Chromosomal Locations for CCDS 18794.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 135920804 135921150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135922967 135923101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135925549 135925686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135929899 135930004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135932899 135933099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135934690 135934880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135936923 135937022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135939074 135939214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1359 nt):
ATGCTGCTGCTGCTGCTGCTGCTGCTAGTGGCTGCGGCCCAGGCAGTGGCCCTGGCTCCGCGCCGCTTCA
CTCCGGACTGGCAGAGCTTGGACTCGCGGCCACTGCCGAGCTGGTTCGATGAGGCCAAGTTCGGGGTGTT
CGTGCACTGGGGGGTGTTCTCGGTGCCCGCCTGGGGCAGTGAATGGTTCTGGTGGCACTGGCAGGGCGAT
CGGATGCCGGCCTACCAGCGCTTCATGACAGAAAACTACCCGCCCGGCTTCAGCTACGCCGACTTCGCAC
CGCAGTTCACAGCGCGCTTCTTCCACCCGGATCAGTGGGCCGAACTCTTTCAGGCTGCCGGGGCCAAGTA
CGTCGTCCTGACCACAAAGCATCATGAAGGCTTCACAAACTGGCCAAGCCCTGTGTCTTGGAACTGGAAC
TCGAAGGACGTGGGGCCCCACCGTGATTTGGTCGGTGAGTTGGGAGCAGCTGTGCGGAAGAGGAACATAC
GCTACGGCCTCTACCACTCGCTCTTGGAATGGTTCCATCCACTCTACCTACTTGATAAGAAAAATGGCTT
CAAAACTCAGCATTTCGTCAGGGCAAAAACAATGCCAGAGCTGTATGACCTTGTTAACAGCTACAAGCCT
GACCTGATCTGGTCCGACGGGGAGTGGGAGTGTCCTGACACGTACTGGAACTCCACCAGCTTCCTTGCTT
GGCTCTACAACGATAGCCCTGTCAAGGATGAGGTGATAGTGAATGACCGGTGGGGCCAGAACTGCTCCTG
TCATCATGGAGGGTACTACAACTGTCAAGACAAATACAAGCCACAGAGCTTGCCAGACCACAAGTGGGAG
ATGTGCACCAGCATGGACAGAGCATCCTGGGGCTATCGAAAAGACATGACCATGTCGACCATCGCCAAGG
AAAATGAAATCATCGAGGAATTGGTTCAGACGGTAAGTTTGGGAGGCAACTATCTTCTCAACATTGGACC
AACTAAAGATGGTCTGATCGTCCCCATCTTCCAAGAAAGGCTTCTTGCTGTCGGCAAGTGGCTGCAGATC
AACGGGGAGGCCATCTATGCCTCCAAACCCTGGAGGGTGCAGTCGGAAAAGAACAAGACGGTTGTGTGGT
ACACTACTAAAAACGCAACTGTTTACGCCACTTTCCTGTACTGGCCAGAAAATGGGATCGTGAACCTCAA
ATCCCCCAAAACGACCTCGGCCACAAAGATAACAATGCTAGGACTAGAAGGAGACCTGAGCTGGACCCAG
GATCCACTGGAGGGCGTCCTCATCTCTCTGCCACAGTTGCCACCTACCGTTCTGCCGGTGGAGTTTGCGT
GGACTCTGAAGCTGACAAAGGTGAACTGA

Translation (452 aa):
MLLLLLLLLVAAAQAVALAPRRFTPDWQSLDSRPLPSWFDEAKFGVFVHWGVFSVPAWGSEWFWWHWQGD
RMPAYQRFMTENYPPGFSYADFAPQFTARFFHPDQWAELFQAAGAKYVVLTTKHHEGFTNWPSPVSWNWN
SKDVGPHRDLVGELGAAVRKRNIRYGLYHSLLEWFHPLYLLDKKNGFKTQHFVRAKTMPELYDLVNSYKP
DLIWSDGEWECPDTYWNSTSFLAWLYNDSPVKDEVIVNDRWGQNCSCHHGGYYNCQDKYKPQSLPDHKWE
MCTSMDRASWGYRKDMTMSTIAKENEIIEELVQTVSLGGNYLLNIGPTKDGLIVPIFQERLLAVGKWLQI
NGEAIYASKPWRVQSEKNKTVVWYTTKNATVYATFLYWPENGIVNLKSPKTTSATKITMLGLEGDLSWTQ
DPLEGVLISLPQLPPTVLPVEFAWTLKLTKVN


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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