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Report for CCDS42730.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42730.1 Public Homo sapiens 2 ACOXL 24 110 108 CCDS HistoryNCBI Gene:55289Re-query CCDS DB by CCDS ID:42730.1Re-query CCDS DB by GeneID:55289See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 42730.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000389811.8 ENSP00000374461.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000389811.8Link to Ensembl Protein Viewer:ENSP00000374461.4Re-query CCDS DB by Nucleotide ID:ENST00000389811Re-query CCDS DB by Protein ID:ENSP00000374461
Original member Current member NCBI NM_001371254.1 NP_001358183.1 Accepted alive Link to Nucleotide Sequence:NM_001371254.1Link to Protein Sequence:NP_001358183.1Re-query CCDS DB by Nucleotide ID:NM_001371254Re-query CCDS DB by Protein ID:NP_001358183Link to BLAST:NP_001358183.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001358183.1 547 Q9NUZ1-1 547 100% 0 0

Chromosomal Locations for CCDS 42730.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 110768390 110768464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110784732 110784815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110793650 110793736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110794076 110794174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110798610 110798724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110799014 110799100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110801652 110801724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110805263 110805395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110841371 110841405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110908789 110908905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110933489 110933642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110963624 110963713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110987108 110987217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110995893 110996004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 111031627 111031714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 111049218 111049288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 111092865 111092966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 111093487 111093498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1644 nt):
ATGAGAGCTTTGACAGTTCAGAGAGTGAAGTTTGCCATGGACCTGCCTCTGTTAAAACGTGCAGGTCAGG
ATCTGGCAGAGAAAACAAAGAATTTTGTCAGCCGAAGCCTTGTCATAGGAGAAGTCCTCTCCATGGCGGA
CATGGCCACAGGAGTGAAGTGCGGAATAATTTATTGGCTATTTGGTGGTGCTATCAGGAATCTCGGAAGC
CCTGAACATGTTACTAAGTGGTTTCAGCCACTCCAGGAGCAGAAATACACTGGGATGTTTGCAATGACCG
AGAGGGGCCATGGGAGCAACGCGAGAGGGATCCAGACCGAAGCCACCTTTGACCTCTCTGCCCAGGAGTT
TGTAATTGACACGCCGTGTGAAAATGCGGAGAAGATGTATATTGGAAATGCCATGTACGGGAATTATGCA
GCTGTCTTTGCCCAGCTCATCATAGATGGAAGATCTCAAGGGCCCCACTGTTTCATCGTTCCTGTCCGGG
ATGAAAACGGAAGCTTGTACCCAGGAGTCACAGCTATTGATATGATGTACAAGGAGGGTCTGCATGGTGT
GGACAATGGGATATTAATATTTGACAAGGTTCGGATACCCAGGGAGAACCTGCTGGATAAGTTTGGTTCC
GTGGCTCCAGATGGACAGTACCATTCGCCTATTAGGAACAAGAGTGCAAGATTCAATGCCATGCTGGCAG
CACTGACCCCTTCGAGATTAGCTGTGGCTTTCCAAGCTATGGGTGCCATGAAGCTTGGGTTGACGATAGC
CATTCGCTATAGCCACAGCCGGAGGCAGTTTGGGCCCAAAACCAAGGAAGAGGTGAAGATCATTGAGCAC
CAAACACAGACCCTGCGGCTGATGCCCCACCTGGCCACAGCCTTGGCCCTGACCTTCGTCAGCAGGTATG
CTGGGGCCCTCCTGGATGAGGATGTCTTCCAGGGAAAGGAGCTGGTCAACAGTCGCTCGCTGCAGGCTCT
GGTGGCGGGGCTGAAGGCCTACAGCACCTGGGAGAACATCCGCTGCCTGCAGGACTGCCGCGAGTGCACT
GGAGGCATGGGTTACATGATGGAAAATCGAATCTCAGGCTTAAAGTGTGACACAGATGTGTTTGCCACTT
TTGAAGGTGACGATGTTGTTATGCTTCAGGTTGTGGGGCGGGAACTGCTGGCCCAATACACCAAACAGTA
TGAAGAAAAACCACTCTTTGGCCTGCTCCAAAACTGGGCTGAATCTGTGGGGGACAAGCTGAGAACCAGT
TTCCTGGCATTTAACATGGACACAGTTGATGATCTCGCCTTTCTGTTGAAAGCAGTGAAATTTCGTGAAA
GGGTTCTTCAGCGGGGTTTGGTGGCCAGAATTTATTATAAGGTAAAGACCAAGAAGGAGGATTTTTTCCA
TGCCTGGAACTCGTGTCTGCACCACGTGGCTTCTCTGTCCCTGGCACACACTCACCGAGTTACCTTAGAG
CAGTTCTCCCTAGCAGTGAAGAGCTGTCCTGACCAAGAGGACCAGACTTTGTTAATGAAGTTTTGTCTGT
TGTATGGAACCAAGCTGGTGTTTCAGGAGCGGGCCTGGTATTTAGAACATAAATACTTGACTCCCATGGC
CAGCACGAGGATCAGGAATCAGGAGAGATGCTGA

Translation (547 aa):
MRALTVQRVKFAMDLPLLKRAGQDLAEKTKNFVSRSLVIGEVLSMADMATGVKCGIIYWLFGGAIRNLGS
PEHVTKWFQPLQEQKYTGMFAMTERGHGSNARGIQTEATFDLSAQEFVIDTPCENAEKMYIGNAMYGNYA
AVFAQLIIDGRSQGPHCFIVPVRDENGSLYPGVTAIDMMYKEGLHGVDNGILIFDKVRIPRENLLDKFGS
VAPDGQYHSPIRNKSARFNAMLAALTPSRLAVAFQAMGAMKLGLTIAIRYSHSRRQFGPKTKEEVKIIEH
QTQTLRLMPHLATALALTFVSRYAGALLDEDVFQGKELVNSRSLQALVAGLKAYSTWENIRCLQDCRECT
GGMGYMMENRISGLKCDTDVFATFEGDDVVMLQVVGRELLAQYTKQYEEKPLFGLLQNWAESVGDKLRTS
FLAFNMDTVDDLAFLLKAVKFRERVLQRGLVARIYYKVKTKKEDFFHAWNSCLHHVASLSLAHTHRVTLE
QFSLAVKSCPDQEDQTLLMKFCLLYGTKLVFQERAWYLEHKYLTPMASTRIRNQERC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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