NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS50264.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50264.1 Public Mus musculus 18 Kctd16 23 108 98 CCDS HistoryNCBI Gene:383348Re-query CCDS DB by CCDS ID:50264.1Re-query CCDS DB by GeneID:383348See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50264.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091927.4 ENSMUSP00000089547.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091927.4Link to Ensembl Protein Viewer:ENSMUSP00000089547.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000091927Re-query CCDS DB by Protein ID:ENSMUSP00000089547
Original member Current member EBI ENSMUST00000236889.1 ENSMUSP00000158201.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000236889.1Link to Ensembl Protein Viewer:ENSMUSP00000158201.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000236889Re-query CCDS DB by Protein ID:ENSMUSP00000158201
Original member Current member NCBI NM_001371039.1 NP_001357968.1 Accepted alive Link to Nucleotide Sequence:NM_001371039.1Link to Protein Sequence:NP_001357968.1Re-query CCDS DB by Nucleotide ID:NM_001371039Re-query CCDS DB by Protein ID:NP_001357968Link to BLAST:NP_001357968.1
Original member Current member NCBI NM_001371040.1 NP_001357969.1 Accepted alive Link to Nucleotide Sequence:NM_001371040.1Link to Protein Sequence:NP_001357969.1Re-query CCDS DB by Nucleotide ID:NM_001371040Re-query CCDS DB by Protein ID:NP_001357969Link to BLAST:NP_001357969.1
Original member Current member NCBI NM_001371041.1 NP_001357970.1 Accepted alive Link to Nucleotide Sequence:NM_001371041.1Link to Protein Sequence:NP_001357970.1Re-query CCDS DB by Nucleotide ID:NM_001371041Re-query CCDS DB by Protein ID:NP_001357970Link to BLAST:NP_001357970.1
Original member Current member NCBI NM_026135.2 NP_080411.1 Accepted alive Link to Nucleotide Sequence:NM_026135.2Link to Protein Sequence:NP_080411.1Re-query CCDS DB by Nucleotide ID:NM_026135Re-query CCDS DB by Protein ID:NP_080411Link to BLAST:NP_080411.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001357968.1 427 Q5DTY9 427 100% 0 0
NP_001357969.1 427 Q5DTY9 427 100% 0 0
NP_001357970.1 427 Q5DTY9 427 100% 0 0
NP_080411.1 427 Q5DTY9 427 100% 0 0

Chromosomal Locations for CCDS 50264.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 40258361 40259192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 40530652 40531103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1284 nt):
ATGGCTCTAAGTGGGAACTGTAGCCGTTATTATCCTCGGGACCAGGGGGCTGCTGTTCCCAACTCCTTCC
CTGAAGTCATAGAGCTGAATGTTGGCGGCCAGGTTTACTTCACTCGCCATTCCACATTAATAAGCATCCC
CCATTCTCTCCTGTGGAAAATGTTCTCCCCAAAGAGAGACACTGCTAACGATCTAGCCAAGGACTCCAAG
GGAAGGTTTTTCATTGACAGAGATGGCTTTCTGTTCCGTTATATTCTGGACTATCTCAGGGACAGGCAGG
TGGTCCTGCCTGATCACTTTCCAGAAAGAGGAAGGCTGAAAAGAGAAGCTGAGTACTTCCAGCTCCCTGA
CCTCGTCAAACTCCTGGCCCCCGAGGATGTCAAGCAAAGCCCGGATGAGTTCTGCCACAGTGACTTCGAA
GATGCCTCCCAAGGAAGCGACACGAGAATCTGCCCCCCCTCTTCGCTGCTTCCTCACGACCGCAAGTGGG
GTTTTATTACTGTGGGTTACAGGGGATCCTGTACCTTGGGCAGAGAGGGGCAAGCAGATGCCAAGTTCCG
GAGAGTCCCCCGGATTTTGGTTTGCGGAAGAATTTCCTTGGCAAAAGAAGTCTTTGGAGAAACTTTGAAT
GAAAGTAGAGACCCCGACCGAGCTCCAGAAAGATACACCTCCAGATTTTATCTCAAGTTTAAACATCTGG
AAAGAGCTTTTGATATGTTGTCAGAGTGTGGATTCCACATGGTGGCCTGTAACTCCTCGGTTACAGCATC
TTTTGTCAACCAGTATACAGAAGATAAGATCTGGTCGAGCTATACTGAGTACGTCTTCTATCGTGAGCCT
TCCCGGTGGTCCTCCTCTCATTGTGACTGCTGCTGCAAGAATGGCAAGGGAGACAAAGGAGAGAGCGGCA
CCTCCTGCAATGACCTGTCCACTTCCAGCTGTGACAGCCAGTCAGAGGCCAGCTCTCCGCAGGAGACGGT
GATCTGTGGGCCTGTAACGCGCCAGAGCAACATCCAGACTCTGGATCGGCCCATCAAGAAAGGTCCGGTG
CAGCTGATCCAACAGTCAGAGATGAGGCGGAAAAGTGACCTGCTCCGGACTCTGACGTCAGGCTCCAGGG
AGTCGAACATAAGCAGCAAAAAGAAAGCTGCGAAGGAAAAGCTCTCCATCGAGGAAGAGCTGGAGAAATG
TATCCAGGATTTCTTGAAGATAAAAATTCCAGATCGCTTCCCTGAGCGAAAACATCCTTGGCAGTCTGAA
CTTTTACGGAAGTATCATCTATAG

Translation (427 aa):
MALSGNCSRYYPRDQGAAVPNSFPEVIELNVGGQVYFTRHSTLISIPHSLLWKMFSPKRDTANDLAKDSK
GRFFIDRDGFLFRYILDYLRDRQVVLPDHFPERGRLKREAEYFQLPDLVKLLAPEDVKQSPDEFCHSDFE
DASQGSDTRICPPSSLLPHDRKWGFITVGYRGSCTLGREGQADAKFRRVPRILVCGRISLAKEVFGETLN
ESRDPDRAPERYTSRFYLKFKHLERAFDMLSECGFHMVACNSSVTASFVNQYTEDKIWSSYTEYVFYREP
SRWSSSHCDCCCKNGKGDKGESGTSCNDLSTSSCDSQSEASSPQETVICGPVTRQSNIQTLDRPIKKGPV
QLIQQSEMRRKSDLLRTLTSGSRESNISSKKKAAKEKLSIEEELEKCIQDFLKIKIPDRFPERKHPWQSE
LLRKYHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH