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Report for CCDS40095.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40095.2 Public Mus musculus 7 Insc 23 108 98 CCDS HistoryNCBI Gene:233752Re-query CCDS DB by CCDS ID:40095.2Re-query CCDS DB by GeneID:233752See the combined annotation on chromosome 7 in Sequence Viewer

Public Note for CCDS 40095.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 40095.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000117543.2 ENSMUSP00000112682.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117543.2Link to Ensembl Protein Viewer:ENSMUSP00000112682.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117543Re-query CCDS DB by Protein ID:ENSMUSP00000112682
Original member Current member EBI ENSMUST00000169913.7 ENSMUSP00000129505.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169913.7Link to Ensembl Protein Viewer:ENSMUSP00000129505.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169913Re-query CCDS DB by Protein ID:ENSMUSP00000129505
Original member NCBI NM_173767.4 NP_776128.2 Updated not alive Link to Nucleotide Sequence:NM_173767.4Link to Protein Sequence:NP_776128.2Re-query CCDS DB by Nucleotide ID:NM_173767Re-query CCDS DB by Protein ID:NP_776128
Current member NCBI NM_173767.5 NP_776128.2 Accepted alive Link to Nucleotide Sequence:NM_173767.5Link to Protein Sequence:NP_776128.2Re-query CCDS DB by Nucleotide ID:NM_173767Re-query CCDS DB by Protein ID:NP_776128Link to BLAST:NP_776128.2

Chromosomal Locations for CCDS 40095.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 114768977 114769032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114790952 114791297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114792246 114792298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114793970 114794093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114804479 114804592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114811603 114811728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114829034 114829205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114834753 114834931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114842123 114842189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114845017 114845172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114846452 114846528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114849816 114849944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1599 nt):
ATGATGGCACTGCCTGGAGGCCGCCACCTGGATTCCGTTCCTCTGCAAGAGCAGAGGCTACACTTCATGC
AGGTAGACTCGGTTCAGCGCTGGATGGAGGATCTGAAGCTCATGACCGAGTGTGAGTGCATGTGCGTCTT
GCAGGCAAAGCCCATCAGCCTGGAGGAAGACACGCAAGGTGACCTTATCCTAGCAGGTGGTCCTGGTCCA
GGAGATCCTCTACAGCTGCTCTTGAAACGGGGCTGGGTCATCAGCACCGAGCTTCGAAGGATCGGGCAGA
AGCTGGCCCAGGACCGCTGGGCCCGTGTGCACAGCATGAGTGTGCGTCTGACGTGCCATGCACGCTCCAT
GGTCAGCGAGTACAGCACCATCAGCAGGACAGCCTCACAGGAAATGGGCCAGGCGGAGAAGCTGCTCATG
GAGAAATGCTCTGAGCTCTCTGCGGTCACGGAGAGGTGCCTCCAGGTGGAAAATGAGCATGTTCTGAAGT
CAATGAAGGCCTGCGTGAGTGAGACCCTGAGCCTGCTGGGCGAGCACTTTGGTCAGCTACTGGAGCTGGC
CCTCACACGGGAAGTGCAGGCACTTGTGAGAAAAATCGATACCTCAGACAATATCTACATCACGGAGTCT
ACCACAGGGAATCTGTTCGGCCTGACCCAGGAGGGGGCTCCTCTGTGCCGCATCATAGCCAAGGAAGGTG
GGGTTGTAGCCCTCTTCAAGGTCTGCCGGCAGGACAGCTTCCGGTGCTTGTACCCCCAGGCACTCCGCAC
ACTGGCCTCTATCTGCTGTGTAGAAGAGGGTGTCCATCAGCTGGAGAAGGTGGACGGTATCCTGTGCTTG
GCTGACATCTTGACTGATGAGAGCCACTCGGAGGCCACTAGAGCTGAGGCTGCAGCCGTGGTAGCCCAGG
TTACCTCCCCACATCTGTCCTTCACCCAGCACCTCACTAGCTTCCTGGAGAACATGGAGGAGATTGTGAC
AGCCCTTATCAAACTGTGCCAAGAGGCCTCGTCAGGGGAAGTCTTCCTGCTGGCCTCTGCGGCCCTCGCC
AATATCACCTTCTTCGACAAAATGGCCTGTGAGATGCTTCTACAGTTGAATGCAATCCGTGTCCTCCTGG
AAGCCTGTGGTGACAAGCAGAGAGTGGACACCCCTTATACTCGGGACCAGATTGTGACCATCTTGGCAAA
CATGTCTGTGCTGGAGCAGTGTGGCTCTGACATCATTCAGGAGAACGGTGTCCAGCTCATCATGGGCATG
CTGTCTGAGAAGCCAAGGTCTGGGACACCTGCTGAAGTGGCAGCCTGTGAAAGAGTACAGCAGAAAGCTG
CAGTGACCCTGGCCCGCCTCTGCCGAGACCCAGATGTGGCCCAGGAGGCCGTTCGGCTCAGCTGTATGTC
TCGCCTGATTGAGCTCTGCCGGTCCCCCTCTGAGAGGAACAGTAGTGATGCTGTCCTGGTGGCCTGCCTG
GCTGCCCTGCGTCGGTTGGCCGGGGTCTGCCCGGAAGGCCTTCAGGACTCTGACTTCCAGCAGCTGGTCC
AGCCTCGGCTGGTGGATTCCTTCTTACTGTGTAGCAATATGGAGGAGAGTTTTGTGTAG

Translation (532 aa):
MMALPGGRHLDSVPLQEQRLHFMQVDSVQRWMEDLKLMTECECMCVLQAKPISLEEDTQGDLILAGGPGP
GDPLQLLLKRGWVISTELRRIGQKLAQDRWARVHSMSVRLTCHARSMVSEYSTISRTASQEMGQAEKLLM
EKCSELSAVTERCLQVENEHVLKSMKACVSETLSLLGEHFGQLLELALTREVQALVRKIDTSDNIYITES
TTGNLFGLTQEGAPLCRIIAKEGGVVALFKVCRQDSFRCLYPQALRTLASICCVEEGVHQLEKVDGILCL
ADILTDESHSEATRAEAAAVVAQVTSPHLSFTQHLTSFLENMEEIVTALIKLCQEASSGEVFLLASAALA
NITFFDKMACEMLLQLNAIRVLLEACGDKQRVDTPYTRDQIVTILANMSVLEQCGSDIIQENGVQLIMGM
LSEKPRSGTPAEVAACERVQQKAAVTLARLCRDPDVAQEAVRLSCMSRLIELCRSPSERNSSDAVLVACL
AALRRLAGVCPEGLQDSDFQQLVQPRLVDSFLLCSNMEESFV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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