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Report for CCDS29117.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29117.1 Public Mus musculus 18 Map3k2 23 108 98 CCDS HistoryNCBI Gene:26405Re-query CCDS DB by CCDS ID:29117.1Re-query CCDS DB by GeneID:26405See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29117.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000096575.4 ENSMUSP00000094326.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000096575.4Link to Ensembl Protein Viewer:ENSMUSP00000094326.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000096575Re-query CCDS DB by Protein ID:ENSMUSP00000094326
Original member Current member NCBI NM_011946.3 NP_036076.2 Accepted alive Link to Nucleotide Sequence:NM_011946.3Link to Protein Sequence:NP_036076.2Re-query CCDS DB by Nucleotide ID:NM_011946Re-query CCDS DB by Protein ID:NP_036076Link to BLAST:NP_036076.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036076.2 619 Q61083 619 99.5154% 0 3

Chromosomal Locations for CCDS 29117.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 32191967 32191970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32196840 32196958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32198651 32198691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32199939 32200038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32203026 32203139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32203800 32203887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32207408 32207538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32208642 32208721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32209729 32209796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32209944 32210036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32211962 32212168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32217144 32217292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32218360 32218491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32220505 32220634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32226552 32226729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32228123 32228348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1860 nt):
ATGGATGATCAGCAAGCTTTGAATTCAATCATGCAAGATTTGGCTGTCCTTCATAAGGCCAGTCGGCCAG
CATTATCTTTACAAGAAACCAGGAAAGCAAAACCTTCATCACCAAAAAAACAGAATGATGTTCGAGTCAA
ATTTGAACATAGAGGAGAAAAAAGGATCCTGCAGGTTACTAGACCAGTTAAACTAGAAGACCTGAGATCT
AAGTCTAAGATCGCCTTTGGGCAGTCTATGGATCTACACTATACCAACAATGAGTTGGTAATTCCGTTAA
CTACCCAAGATGACTTGGACAAAGCTGTGGAACTGCTGGATCGCAGTATTCACATGAAGAGTCTCAAGAT
ATTACTTGTAGTAAATGGGAGTACACAGGCTACTAATTTAGAACCATCACCGTCACCAGAAGATTTGAAT
AATACACCACTTGGTGCAGAGAGGAAAAAGCGGCTATCTGTAGTAGGTCCCCCTAATAGGGATAGAAGTT
CCCCTCCTCCAGGATACATTCCAGACGAGCTACACCAGATTGCCCGGAATGGGTCATTCACTAGCATCAA
CAGTGAAGGAGAGTTCATTCCAGAGAGCATGGACCAAATGCTGGATCCATTGTCTTTAAGCAGCCCTGAA
AATTCTGGCTCAGGAAGCTGTCCGTCACTTGATAGTCCTTTGGATGGAGAAAGCTACCCAAAATCACGGA
TGCCTAGGGCACAGAGCTACCCAGATAATCATCAGGAGTTTACAGACTATGATAACCCCATTTTTGAGAA
ATTTGGAAAAGGAGGAACATATCCAAGAAGGTACCACGTTTCCTATCATCACCAGGAGTATAATGACGGT
CGGAAGACTTTTCCAAGAGCTAGAAGGACCCAGGGCACCAGTTTCCGGTCTCCTGTGAGCTTCAGTCCTA
CTGATCACTCCTTAAGCACTAGTAGTGGAAGCAGTGTCTTTACCCCAGAGTATGACGACAGTCGAATAAG
AAGACGGGGGAGTGACATAGACAATCCTACTTTGACTGTCACAGACATCAGCCCACCCAGCCGTTCACCT
CGAGCTCCGACCAACTGGAGACTGGGCAAGCTGCTTGGCCAAGGAGCTTTTGGTAGGGTCTACCTCTGCT
ATGATGTTGATACCGGAAGAGAGCTGGCTGTTAAGCAAGTTCAGTTTAACCCTGAGAGCCCAGAGACCAG
CAAGGAAGTAAATGCACTTGAGTGTGAAATTCAGTTGTTGAAAAACTTGTTGCATGAGCGAATTGTTCAG
TATTATGGCTGTTTGAGGGATCCTCAGGAGAAAACACTTTCCATCTTTATGGAGTATATGCCAGGGGGTT
CAATTAAGGACCAACTAAAAGCCTACGGAGCTCTTACTGAGAACGTGACGAGGAAGTACACCCGTCAGAT
TCTGGAGGGGGTCCATTATTTGCATAGTAATATGATTGTCCATAGAGATATCAAAGGAGCAAATATCTTA
AGGGATTCCACAGGCAATATCAAGTTAGGAGACTTTGGGGCTAGTAAACGGCTTCAGACCATCTGTCTCT
CAGGCACAGGAATGAAGTCTGTCACAGGCACGCCATACTGGATGAGTCCTGAGGTCATCAGTGGAGAAGG
CTATGGAAGAAAAGCAGACATCTGGAGTGTAGCATGTACTGTGGTAGAAATGCTAACTGAAAAGCCACCT
TGGGCTGAATTTGAAGCAATGGCTGCCATCTTTAAGATCGCCACTCAGCCAACGAACCCAAAGCTGCCAC
CTCATGTCTCAGACTATACTCGGGACTTCCTCAAACGGATTTTTGTAGAGGCCAAACTTCGACCTTCAGC
GGAGGAGCTCTTGCGGCACATGTTTGTGCATTATCACTAG

Translation (619 aa):
MDDQQALNSIMQDLAVLHKASRPALSLQETRKAKPSSPKKQNDVRVKFEHRGEKRILQVTRPVKLEDLRS
KSKIAFGQSMDLHYTNNELVIPLTTQDDLDKAVELLDRSIHMKSLKILLVVNGSTQATNLEPSPSPEDLN
NTPLGAERKKRLSVVGPPNRDRSSPPPGYIPDELHQIARNGSFTSINSEGEFIPESMDQMLDPLSLSSPE
NSGSGSCPSLDSPLDGESYPKSRMPRAQSYPDNHQEFTDYDNPIFEKFGKGGTYPRRYHVSYHHQEYNDG
RKTFPRARRTQGTSFRSPVSFSPTDHSLSTSSGSSVFTPEYDDSRIRRRGSDIDNPTLTVTDISPPSRSP
RAPTNWRLGKLLGQGAFGRVYLCYDVDTGRELAVKQVQFNPESPETSKEVNALECEIQLLKNLLHERIVQ
YYGCLRDPQEKTLSIFMEYMPGGSIKDQLKAYGALTENVTRKYTRQILEGVHYLHSNMIVHRDIKGANIL
RDSTGNIKLGDFGASKRLQTICLSGTGMKSVTGTPYWMSPEVISGEGYGRKADIWSVACTVVEMLTEKPP
WAEFEAMAAIFKIATQPTNPKLPPHVSDYTRDFLKRIFVEAKLRPSAEELLRHMFVHYH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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