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Report for CCDS28363.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28363.1 Public Mus musculus 17 Tfb1m 23 108 98 CCDS HistoryNCBI Gene:224481Re-query CCDS DB by CCDS ID:28363.1Re-query CCDS DB by GeneID:224481See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28363.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041003.7 ENSMUSP00000035291.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041003.7Link to Ensembl Protein Viewer:ENSMUSP00000035291.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000041003Re-query CCDS DB by Protein ID:ENSMUSP00000035291
Original member Current member NCBI NM_146074.3 NP_666186.1 Accepted alive Link to Nucleotide Sequence:NM_146074.3Link to Protein Sequence:NP_666186.1Re-query CCDS DB by Nucleotide ID:NM_146074Re-query CCDS DB by Protein ID:NP_666186Link to BLAST:NP_666186.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666186.1 345 Q8JZM0 345 100% 0 0

Chromosomal Locations for CCDS 28363.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 3519552 3519795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3521645 3521772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3536078 3536197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3543097 3543248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3545583 3545691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3554932 3555083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3557581 3557713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1038 nt):
ATGGCTGCCTCGGGGAAGCTCGGCACTTTCCGCCTTCCCCCGTTGCCCACCATTCGGGAGATCATTAAGT
TGTTCGGACTGCGAGCGGTGAAACAGCTTTCCCAGAATTTCCTCCTGGACTTGAGGCTGACAGACAAGAT
TGTAAGGAAAGCTGGCAGTCTAGCAGATGTTTATGTTTATGAAGTGGGTCCTGGGCCCGGGGGAATCACA
AGATCCATCCTGAATGCCAACGTTGCTGAGCTTCTGGTGGTTGAAAAGGACACTCGCTTTATCCCAGGGT
TACAGATGCTCTCTGATGCAGCACCTGGAAAACTCCGAATTGTTCATGGAGATGTGCTGACATACAAGAT
AGAAAAGGCTTTTCCAGGCAACATTAGAAGACAGTGGGAAGATGATCCTCCAAATGTACACATTATTGGA
AATCTACCTTTTAGTGTTTCAACTCCACTGATTATCAAGTGGCTTGAAAATATTTCTCTTAAAGATGGCC
CTTTCGTTTATGGCAGAACTAAGATGACGTTAACGTTTCAAAAGGAAGTGGCTGAGAGACTTGTAGCCAC
TACAGGAAGCAAACAGCACAGTCGCCTTTCCATTATGGCCCAGTACCTCTGCAATGTTGAACACCTCTTT
ACAATCCCAGGAAAAGCTTTTGTTCCCAAACCAAAAGTTGATGTAGGAGTGGTGCACCTTACGCCCTTGA
TAGAGCCCAAGATCAAGCAGCCATTCAAGCTGGTAGAAAAAGTTGTCCAGAATGCGTTTCAGTTTCGAAG
GAAATATTGCCACCGAGGGCTTGGAATGTTATTCCCTGAAGCACAACGCCTCGAAAGCACTGGAAGGCTG
TTACAGTTGGCAGACATTGATCCAACTCTCCGGCCCACCCACCTCTCGCTCATGCATTTTAAGAGTTTGT
GTGATGTATACAGAAAAATGTGTGATGAAGACCCACAACTCTTTACTTATAACTTCAGAGAGGAGCTCAA
GCAAAAGAAAAGTAAAGGCCAAGAAAAAGATGGTGACCCAGAAAGCTGCGGGTTCTAA

Translation (345 aa):
MAASGKLGTFRLPPLPTIREIIKLFGLRAVKQLSQNFLLDLRLTDKIVRKAGSLADVYVYEVGPGPGGIT
RSILNANVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTYKIEKAFPGNIRRQWEDDPPNVHIIG
NLPFSVSTPLIIKWLENISLKDGPFVYGRTKMTLTFQKEVAERLVATTGSKQHSRLSIMAQYLCNVEHLF
TIPGKAFVPKPKVDVGVVHLTPLIEPKIKQPFKLVEKVVQNAFQFRRKYCHRGLGMLFPEAQRLESTGRL
LQLADIDPTLRPTHLSLMHFKSLCDVYRKMCDEDPQLFTYNFREELKQKKSKGQEKDGDPESCGF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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