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Report for CCDS50040.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50040.1 Public Mus musculus 17 Rab11fip3 23 108 98 CCDS HistoryNCBI Gene:215445Re-query CCDS DB by CCDS ID:50040.1Re-query CCDS DB by GeneID:215445See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50040.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000120691.8 ENSMUSP00000112875.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120691.8Link to Ensembl Protein Viewer:ENSMUSP00000112875.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120691Re-query CCDS DB by Protein ID:ENSMUSP00000112875
Original member Current member NCBI NM_001162868.2 NP_001156340.1 Accepted alive Link to Nucleotide Sequence:NM_001162868.2Link to Protein Sequence:NP_001156340.1Re-query CCDS DB by Nucleotide ID:NM_001162868Re-query CCDS DB by Protein ID:NP_001156340Link to BLAST:NP_001156340.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156340.1 1047 Q8CHD8-1 1047 100% 0 0

Chromosomal Locations for CCDS 50040.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 25990772 25990885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25990976 25991116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25991258 25991413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25991663 25991800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25992582 25992663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25994186 25994326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25997929 25998032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26004551 26004644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26008855 26008890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26013774 26013917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26015944 26016155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26024375 26024466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26036589 26036682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26067582 26069177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3144 nt):
ATGGAGCTGTGCCAGCCGACCTCCCTGTCAGACCACGACCAGCCAGCGTCTGGGCCCCAGCGTGGGGTCA
TGGGGCTGGTGGGGCCCGACGCTCCTCGCGGCTGGTCAGAAGAGCCCGAGGAACACGCCCAGCTTCAACG
GTGGCCAGAGGGACCCAACGCGCCAATCTGCTGGCCCGAGGAGGTAGAGGAGCCTCACGCTCCTAGTCGC
TGGGCCAAAGAGCCCAATGCCCCTCGCTGCTCGTCCCAGGAGCCCGATGAATCCTGTCACTTGGCAGAGG
AGCTGGAGGAATCCGACTCCCCTCGCTGCTGGCCCCAGGAGCCAGACACACCGTGCCACTTGGCCAAGGA
GTTGGAGGAACCCGACGCCCCTCGCTGCCTGCCCCAGGAGCCCGACACACCGTGCTACTTGGCCAAAGAG
CTAGAGGAACCCAACATCCCTCGGTGCTGGCCCCAGGAGCCCGACGTGCCGTGCCACTTGGCCAAGGAGC
TAGAGGAACCCGACGCCCCTCGCTGCTGGCCCCAGGAACCAGACGCATTCTGTCACTTGCTCAAGGAGGT
GGAGGAACCTGATGCCCTTCGCTGCTGGCTTCAAGGGCCAGACGCACCGTGCCACTTGGCCAAGGAACTG
GAGGACCTCGACTCCCCTCGCTGCTGGCCCCAGGAGCCCGACGAATCCTGTCACTTGGCTAAGGAGCTGG
AGGAACCAGACGCACCGTGCCACTTAGCCAAAGAGCTGGAGGAACCCGACGCCCCTCGCTGCTGGCCCCA
GGAGCCCGACGTGCCCTGTCTCTTGGCCAAAAAGTGGGAGGAATCCGACGCACCGTGCCTCTTGACGGAG
GAGCTGGAAGAGCCTGACGCCCTTCACTGCTGGCCCCAGGAGTCAGAGGCACCGTGTTTGTTGGCCAAGG
AGCTAGAAGAGCCTGATGCCTCTCACAGCTGTCCTCAGGAGGCGGACACAGGGTGCCTCTCGGCCAAGGA
GCCAGAGGAGCCTGATGTCTCTCACCTGTGGCAGGGGGTACCCGATGCACCGTGCCTCTTGGTCAAGGAA
CCAGAGGAGGCCGATGCACTTCACTGTTGTTGGCCCGAGGAATCCGAGGAGCCGGATGCTCTCAACCCAC
CGTGTTTCTGGGCCAATGAACCAGACGAGCCCGATCCATCACGATGTTGGTCAGAGGAGCCCCAGGTGCT
GTGCCTCTGGCCGGAGGAGCAGAACACAAAGCGGTGCTGGCAGGAAGAGCCCGATGCACCCTGCTTCTGG
CCCGAGGATCGAGAGGAACCCATAGTTTCGTGTCTTCAATTTAAAGAGCCAGAGAAGCCCAAAGTCCGGA
GCAGTTGGCCTGAGGAGCTGGAAGACTGCTGCCCTACGCGGGGCCTACCCCTTGAGCCCTTGCTCGCCGA
CGGCGAGCTGCTGCAGGCATGTCCCGGGCCACCCTCGGACCCAGGACCAGCGTTGTCGCTGCCCAGCGAG
CCCGGGACAGCTCAGGAGGAGGGTGCACGCCTCAGGGCGGTATTTGACGCCCTGGACAGAGATGGGGACG
GCTTCGTCCGCATCGAGGATTTCATCCAATTCGCCACGGTCTATGGGGCAGAGCAGGTGAAGGACTTAAC
TCAGTACCTGGACCCGAGTGGGCTTGGCGTAATCAGCTTTGAAGATTTCTACCAAGGGATTGTAGCCATC
AGAAATGGAGATCCTGATGGCCAGTTGTACAGCGTGGAGCCTGTCCAAGATGAAGAGACCCCTGCCTGTG
CCGATGAGTTTGACGACTTTGTCACCTATGAGGCCAACGAGGTGACAGACAGTGCATATATGGGGTCTGA
GAGCACCTACAGTGAGTGTGAGACCTTCACAGATGAGGACACCAGCACCCTGGTGCACCCCGAGCTGCAG
CCTGAAGGGGACGTGGACAGTGCTGGTGGCTCAGGGGTGCCCTCTGAGTGCCTGGACACCATGGAGGAGC
CTGACCATGGTGCATTGCTGCTGCTCCCAGGCAGATCCCGCCCCCACAGCCAAGCTGTCGTCATGGTGAT
TGGCAGTGAGGAACATTTTGAAGATTATGGTGAGGGCAATGAGGCAGAACTATCCCCGGAGACCCTCTGC
GATGGGGACGGCGAGGACCCTGCTTTTCTCACCCCCAGCCCAGCCAAGCGGCTCTCCAGCAGGAAGGTGG
CAAGGTATCTGCACCAGTCGGGGACCCTGACTATGGAGGCCCTGGAGGACCCTCCCCCAGAGCCTGTGGA
GTGCCCAGAGGAGGACATTGCAGACAAGGTCATCTTCCTAGAGAGACGGGTGTCAGAGCTGGAGAAGGAC
AGTGCAGCTGCTGGCGAGCAGCATGGCAGGCTGAGGCAAGAAAACCTCCAGCTGGTGCACAGAGCCAATG
CCTTGGAAGAGCAGCTGAAGGAACAGGAGTTCAGAGCCCAAGAGAAGGTCCTAGAAGAAACCAGGAAGCA
GAAGGAACTTCTGTGCAAGATGGAGCGTGAGAAGAGCATTGAGATCGAGAACCTGCAGGCCAGGTTGCAG
CAGCTGGATGAGGAGAACAGTGAGCTGCGGTCCTGCACACCCTGTCTGAAGGCCAACATCGAGCGCCTTG
AGGAGGAGAAGCAGAAGATGCTGGATGAGATTGAGGAGTTGACACAGCGGCTCAGTGAGGAACAGGAGAA
TAAGAGGAAAATGGGGGACAGGCTGAGCCATGAGCGGCACCAATTCCAGAGAGACAAGGAAGCAACCCAG
GAGCTGATCGAGGACCTCCGCAAGCAGCTAGAACATCTACAGCTCCTCAGACTGGAGGTGGAGCAGCGAC
GGGGCCGCAGCAGCAGCCTGGGCCTGCAGGAGTACAACAGCCGTGCACGGGAGAGCGAGCTGGAGCAGGA
GGTCCGCAGACTCAAACAGGACAACCGTAACCTGAAGGAGCAAAATGATGAGCTAAATGGGCAGATCATC
ACCCTCAGCATCCAGGGTGCCAAGAGCCTCTTCTCCACGTCTTTCTCAGAATCACTGGCTGCAGAAATCA
GCTCTGTCTCCCGAGATGAGCTCATGGAAGCAATCCAGAAGCAGGAGGAGATCAATTTCCGCCTGCAGGA
CTACATTGACAGGATCATTGTGGCCATCCTGGAGACCAACCCATCCATCCTAGAGGTCAAGTAG

Translation (1047 aa):
MELCQPTSLSDHDQPASGPQRGVMGLVGPDAPRGWSEEPEEHAQLQRWPEGPNAPICWPEEVEEPHAPSR
WAKEPNAPRCSSQEPDESCHLAEELEESDSPRCWPQEPDTPCHLAKELEEPDAPRCLPQEPDTPCYLAKE
LEEPNIPRCWPQEPDVPCHLAKELEEPDAPRCWPQEPDAFCHLLKEVEEPDALRCWLQGPDAPCHLAKEL
EDLDSPRCWPQEPDESCHLAKELEEPDAPCHLAKELEEPDAPRCWPQEPDVPCLLAKKWEESDAPCLLTE
ELEEPDALHCWPQESEAPCLLAKELEEPDASHSCPQEADTGCLSAKEPEEPDVSHLWQGVPDAPCLLVKE
PEEADALHCCWPEESEEPDALNPPCFWANEPDEPDPSRCWSEEPQVLCLWPEEQNTKRCWQEEPDAPCFW
PEDREEPIVSCLQFKEPEKPKVRSSWPEELEDCCPTRGLPLEPLLADGELLQACPGPPSDPGPALSLPSE
PGTAQEEGARLRAVFDALDRDGDGFVRIEDFIQFATVYGAEQVKDLTQYLDPSGLGVISFEDFYQGIVAI
RNGDPDGQLYSVEPVQDEETPACADEFDDFVTYEANEVTDSAYMGSESTYSECETFTDEDTSTLVHPELQ
PEGDVDSAGGSGVPSECLDTMEEPDHGALLLLPGRSRPHSQAVVMVIGSEEHFEDYGEGNEAELSPETLC
DGDGEDPAFLTPSPAKRLSSRKVARYLHQSGTLTMEALEDPPPEPVECPEEDIADKVIFLERRVSELEKD
SAAAGEQHGRLRQENLQLVHRANALEEQLKEQEFRAQEKVLEETRKQKELLCKMEREKSIEIENLQARLQ
QLDEENSELRSCTPCLKANIERLEEEKQKMLDEIEELTQRLSEEQENKRKMGDRLSHERHQFQRDKEATQ
ELIEDLRKQLEHLQLLRLEVEQRRGRSSSLGLQEYNSRARESELEQEVRRLKQDNRNLKEQNDELNGQII
TLSIQGAKSLFSTSFSESLAAEISSVSRDELMEAIQKQEEINFRLQDYIDRIIVAILETNPSILEVK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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