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Report for CCDS27246.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27246.1 Public Mus musculus 14 Egr3 23 108 98 CCDS HistoryNCBI Gene:13655Re-query CCDS DB by CCDS ID:27246.1Re-query CCDS DB by GeneID:13655See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27246.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000225200.1 ENSMUSP00000153491.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000225200.1Link to Ensembl Protein Viewer:ENSMUSP00000153491.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000225200Re-query CCDS DB by Protein ID:ENSMUSP00000153491
Original member Current member NCBI NM_018781.4 NP_061251.1 Accepted alive Link to Nucleotide Sequence:NM_018781.4Link to Protein Sequence:NP_061251.1Re-query CCDS DB by Nucleotide ID:NM_018781Re-query CCDS DB by Protein ID:NP_061251Link to BLAST:NP_061251.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061251.1 387 P43300 387 100% 0 0

Chromosomal Locations for CCDS 27246.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 70077445 70077598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70078896 70079905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1164 nt):
ATGACCGGCAAACTCGCCGAGAAGCTGCCGGTGACCATGAGCAGTTTGCTAAATCAATTGCCTGACAATC
TG
TACCCCGAGGAGATCCCCAGCGCGCTCAACCTCTTCTCCGGCAGCAGCGACTCGGTAGCCCATTACAA
T
CAGATGGCTACAGAGAATGTGATGGACATCGGTCTGACCAACGAGAAGCCCAATCCGGAACTCTCTTAT
TCG
AGCTCTTTCCAGCCAGCCCCCGGCAACAAGACCGTGACCTACTTGGGAAAGTTCGCTTTCGACTCTC
CT
TCCAACTGGTGCCAGGACAACATCATTAGCCTCATGAGTGCCGGCATCTTGGGGGTGCCCCCGGCCTC
A
GGGGCGCTCAGTACGCAGACGTCCACGGCTAGCATGGTGCAGCCTCCTCAGGGAGACGTGGAGGCCATG
TAT
CCGGCGCTGCCTCCTTATTCCAACTGCGGCGATCTCTACTCGGAGCCCGTGTCTTTCCACGACCCCC
AG
GGAAACCCTGGGCTCGCCTATTCCCCCCAGGATTACCAATCGGCCAAGCCGGCCTTGGACAGCAATCT
T
TTCCCCATGATTCCTGACTACAACCTGTACCACCATCCCAACGACATGGGCTCCATTCCGGAACATAAG
CCC
TTCCAGGGCATGGACCCCATCCGGGTCAACCCACCCCCTATTACCCCACTGGAGACCATCAAGGCCT
TC
AAAGACAAGCAGATCCACCCGGGATTCGGCAGCCTGCCCCAACCGCCGCTCACTCTCAAGCCCATCCG
G
CCCCGCAAGTACCCCAATCGGCCTAGCAAGACCCCGCTCCACGAGCGGCCCCACGCGTGTCCCGCGGAA
GGC
TGTGACCGCCGTTTCAGCCGCTCAGACGAGCTGACCCGGCACCTGCGCATCCACACGGGCCACAAGC
CC
TTCCAGTGTCGGATCTGCATGCGCAGCTTCAGCCGCAGCGACCACCTCACCACTCACATCCGCACGCA
C
ACCGGGGAGAAGCCCTTTGCCTGTGAGTTCTGTGGGCGCAAGTTTGCGCGCAGCGACGAGCGCAAGCGC
CAC
GCCAAGATCCACCTCAAGCAAAAGGAGAAGAAGTCGGAGAAAGGGGGTGCGCCCTCTGCATCCTCGG
CG
CCCACCGTGTCCCTGGCCCCTGTGGTCACCACCTGCGCCTGA


Translation (387 aa):
MTGKLAEKLPVTMSSLLNQLPDNLYPEEIPSALNLFSGSSDSVAHYNQMATENVMDIGLTNEKPNPELSY
S
SSFQPAPGNKTVTYLGKFAFDSPSNWCQDNIISLMSAGILGVPPASGALSTQTSTASMVQPPQGDVEAM
Y
PALPPYSNCGDLYSEPVSFHDPQGNPGLAYSPQDYQSAKPALDSNLFPMIPDYNLYHHPNDMGSIPEHK
P
FQGMDPIRVNPPPITPLETIKAFKDKQIHPGFGSLPQPPLTLKPIRPRKYPNRPSKTPLHERPHACPAE
G
CDRRFSRSDELTRHLRIHTGHKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFACEFCGRKFARSDERKR
H
AKIHLKQKEKKSEKGGAPSASSAPTVSLAPVVTTCA




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser